{"id":"W2096047322","doi":"10.1094/phyto-10-10-0280","title":"Molecular Epidemiology of <i>Plum pox virus</i> in Japan","year":2011,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministry of Agriculture, Forestry and Fisheries","keywords":"Biology; Phylogenetic tree; Monophyly; Molecular epidemiology; Strain (injury); Genome; Virology; Pox virus; Genetic diversity; Phylogenetics; Genetics; Potyvirus; Virus; Genotype; Gene; Plant virus; Clade; Demography; Population","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006463176,0.0001102098,0.0003757658,0.0000277297,0.00003441369,8.185672e-7,0.00027902,0.0001024419,0.0001488471],"category_scores_gemma":[0.0004485382,0.00004465679,0.00007319497,0.0002374264,0.0002414296,0.00004109392,0.0001639503,0.0001564724,0.00004641597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001073253,"about_ca_system_score_gemma":0.00000528316,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000823212,"about_ca_topic_score_gemma":0.0013318,"domain_scores_codex":[0.9985454,0.0003852244,0.0002999525,0.000270837,0.00007456742,0.0004239978],"domain_scores_gemma":[0.9993697,0.0003715495,0.00009457895,0.00007064894,0.00003708338,0.00005643769],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004245121,0.00009874296,0.220376,0.000005189773,0.0000048979,0.00005508237,0.0001202895,9.976629e-7,0.7747428,0.001554116,0.0000635205,0.002935939],"study_design_scores_gemma":[0.00009142215,0.0002548958,0.9640863,0.000008400592,0.000003289643,0.00002338691,0.00006489969,0.000008799398,0.02863668,0.005637037,0.001085199,0.00009972503],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953371,0.0007934369,0.000004210709,0.0002856758,0.0000664505,0.0001188484,0.00009383575,0.00002265718,0.003277765],"genre_scores_gemma":[0.9990122,0.0002377195,0.000188127,0.0004713202,0.00003308424,0.00002683523,0.000007613242,7.110849e-7,0.00002238024],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7461061,"threshold_uncertainty_score":0.1821051,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08566461244833418,"score_gpt":0.2888252477320806,"score_spread":0.2031606352837464,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}