{"id":"W2096047322","doi":"10.1094/phyto-10-10-0280","title":"Molecular Epidemiology of <i>Plum pox virus</i> in Japan","year":2011,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ministry of Agriculture, Forestry and Fisheries","keywords":"Biology; Phylogenetic tree; Monophyly; Molecular epidemiology; Strain (injury); Genome; Virology; Pox virus; Genetic diversity; Phylogenetics; Genetics; Potyvirus; Virus; Genotype; Gene; Plant virus; Clade; Demography; Population","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002462211,0.0002193486,0.0002706179,0.0008344825,0.0004133466,0.0006556985,0.0001593099,0.0002393548,0.0002765827],"category_scores_gemma":[0.0003433006,0.0002303334,0.000194338,0.0006575152,0.0003300073,0.0004769794,0.0003951297,0.0002475827,0.00008650674],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005033466,"about_ca_system_score_gemma":0.00045609,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01121957,"about_ca_topic_score_gemma":0.008920675,"domain_scores_codex":[0.9998112,0.00003297876,0.00002502335,0.00005995809,0.00003141919,0.0000393058],"domain_scores_gemma":[0.999683,0.00003156683,0.0001103649,0.00001358918,0.00007008598,0.00009142809],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003342835,0.00007996202,0.723972,0.0003575935,0.0001343112,0.001471331,0.003181551,0.0009902504,0.2432797,0.0003276361,0.0002372407,0.02563424],"study_design_scores_gemma":[0.00001044369,0.0001766364,0.9925119,0.0000286055,0.00005404031,0.001156673,0.00157387,0.0004721431,0.002439549,0.00008281325,0.001476699,0.00001661612],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989402,0.0005016045,0.0002299705,0.00002287311,0.000002629711,0.000008451669,0.00005021731,0.000002840924,0.0002412898],"genre_scores_gemma":[0.9977113,0.001027599,0.0007364589,0.0000263351,0.000006211905,0.000009401898,0.0003177873,0.000002775821,0.000162053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01121957,"threshold_uncertainty_score":0.02230853,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08566461244833418,"score_gpt":0.2888252477320806,"score_spread":0.2031606352837464,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}