{"id":"W2096589119","doi":"10.1093/bioinformatics/btt452","title":"The BioPAX Validator","year":2013,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Cancer Institute; National Human Genome Research Institute; National Institutes of Health","keywords":"Validator; Computer science; Programming language; Service (business); Consistency (knowledge bases); Java; World Wide Web; Information retrieval; Software engineering; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01149231,0.003438948,0.001703807,0.005170757,0.002428414,0.00731272,0.004620373,0.002376182,0.1789424],"category_scores_gemma":[0.03007425,0.002781061,0.002372981,0.005186708,0.001061128,0.008184634,0.00548777,0.004073934,0.1906775],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002373158,"about_ca_system_score_gemma":0.004824946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003932341,"about_ca_topic_score_gemma":0.002087965,"domain_scores_codex":[0.9932485,0.001452685,0.00134045,0.001424076,0.002037254,0.0004970335],"domain_scores_gemma":[0.9770861,0.006867772,0.00204641,0.006244688,0.007080077,0.0006748394],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001039773,0.00009614845,0.001633673,0.001476615,0.00008220014,0.0003952382,0.0005468443,0.0006241925,0.003352212,0.01270399,0.8862817,0.09176731],"study_design_scores_gemma":[0.0001460012,0.00005325278,0.001283643,0.0004863543,0.00004376579,0.0003921224,0.00009177016,0.003263432,0.01176179,0.00824857,0.9741013,0.0001281059],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.002434698,0.0007699843,0.2150968,0.002088819,0.001016458,0.0008848876,0.1323196,0.59813,0.04725872],"genre_scores_gemma":[0.02187711,0.00121272,0.2078223,0.00291184,0.0004822266,0.0026744,0.4012859,0.2891997,0.07253373],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1789424,"threshold_uncertainty_score":0.5986218,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007486780389627012,"score_gpt":0.2108091162860064,"score_spread":0.2033223358963794,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}