{"id":"W2096629558","doi":"10.1093/nar/gkv362","title":"RSAT 2015: Regulatory Sequence Analysis Tools","year":2015,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":255,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation","funders":"Canadian Institutes of Health Research; Agence Nationale de la Recherche","keywords":"Biology; Software; Suite; Genome; Computational biology; Genomics; Software suite; Web server; Cluster analysis; Sequence analysis; Comparative genomics; Genetics; Bioinformatics; Computer science; World Wide Web; The Internet; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003907179,0.002969769,0.001974581,0.003296135,0.0007844465,0.002699471,0.00426424,0.00143752,0.07919642],"category_scores_gemma":[0.006568813,0.001937263,0.003219901,0.002023732,0.0006341197,0.00236274,0.002162579,0.003086817,0.07017182],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007642537,"about_ca_system_score_gemma":0.002152889,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001209232,"about_ca_topic_score_gemma":0.001198537,"domain_scores_codex":[0.9980661,0.0003664461,0.0002699864,0.0005103177,0.0005929082,0.0001942253],"domain_scores_gemma":[0.9985172,0.0006593648,0.0002275435,0.0001977865,0.0002822032,0.0001158158],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002558869,0.0003116975,0.003881456,0.005266488,0.00050195,0.001253776,0.00083103,0.009793994,0.08379012,0.02107141,0.6976928,0.1730465],"study_design_scores_gemma":[0.000905235,0.0003895802,0.004105941,0.0007206835,0.0002934185,0.001928366,0.0002155873,0.06569117,0.07454709,0.03433659,0.8164835,0.0003827994],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.004659733,0.001109939,0.3329796,0.0003574103,0.0004105853,0.000423224,0.09386613,0.5568093,0.00938408],"genre_scores_gemma":[0.03238521,0.001419481,0.5340372,0.001193265,0.0002499872,0.002366591,0.2873891,0.1233865,0.01757261],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.07919642,"threshold_uncertainty_score":0.2649384,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1138926118134623,"score_gpt":0.3739178445848067,"score_spread":0.2600252327713444,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}