{"id":"W2096861682","doi":"10.1093/gbe/evt195","title":"Being Aquifex aeolicus: Untangling a Hyperthermophile’s Checkered Past","year":2013,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Genome Atlantic; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Aquifex aeolicus; Archaea; Phylogenetic tree; Lineage (genetic); Phylogenetics; Evolutionary biology; Hyperthermophile; Genome; Operational taxonomic unit; Proteobacteria; Genetics; Phylogenetic diversity; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000492807,0.0002223956,0.0002673989,0.0004215361,0.001412337,0.00129515,0.0003875125,0.0007038923,0.001418055],"category_scores_gemma":[0.001372928,0.0001480657,0.000113567,0.0004939766,0.001614002,0.002260667,0.001456196,0.0005020816,0.0002809531],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004358268,"about_ca_system_score_gemma":0.00033832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003060978,"about_ca_topic_score_gemma":0.004211872,"domain_scores_codex":[0.9997723,0.00004019941,0.000009702436,0.00009116998,0.00004208561,0.00004468938],"domain_scores_gemma":[0.999463,0.0001073939,0.0001477832,0.00008569935,0.0000958556,0.0001002116],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007896204,0.00006274517,0.5636099,0.0004033305,0.0001519789,0.003737468,0.01964216,0.001333021,0.2127389,0.02151215,0.001721071,0.1742976],"study_design_scores_gemma":[0.00001514827,0.0003344119,0.8686276,0.0001715934,0.000115488,0.006725519,0.02237283,0.003634146,0.01779369,0.03114992,0.04892287,0.0001368579],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939165,0.0006492017,0.001694277,0.0006721959,0.00001563914,0.000002497907,0.00005642194,0.00002197231,0.002971367],"genre_scores_gemma":[0.9966199,0.0003401815,0.001656055,0.0001876931,0.0000114993,0.000002357749,0.0001142892,0.00001068864,0.001057215],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003060978,"threshold_uncertainty_score":0.00608629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006669287724599684,"score_gpt":0.2072455229131228,"score_spread":0.2005762351885231,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}