{"id":"W2097050932","doi":"10.1186/1471-2164-14-186","title":"Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation","year":2013,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":169,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Project 211; Chongqing Science and Technology Commission; National Key Research and Development Program of China; National High-tech Research and Development Program; Ministry of Education of the People's Republic of China; National Natural Science Foundation of China","keywords":"Biology; Genome; Comparative genomics; Genetics; Genomics; Genome evolution; Microsporidia; Gene; Evolutionary biology; Gene duplication; Microbiology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002678385,0.0001892107,0.0004121482,0.0001087117,0.0002068197,0.00003396632,0.0001097903,0.0002945728,0.00007567229],"category_scores_gemma":[0.00008122945,0.0002000502,0.00006088161,0.00009434609,0.0001136403,0.0001903979,0.00003560547,0.0001857323,0.0003054517],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002900133,"about_ca_system_score_gemma":0.0001651892,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005693671,"about_ca_topic_score_gemma":0.0001587195,"domain_scores_codex":[0.9987579,0.0001584869,0.0004578951,0.0002747739,0.00003868803,0.0003122768],"domain_scores_gemma":[0.9986847,0.0004596737,0.0003561058,0.0002273887,0.0002203992,0.00005174239],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003110643,0.0001260862,0.1684305,0.00002326955,0.0001404664,3.866078e-7,0.00421804,0.0002426675,0.8260396,0.0001858667,0.0002057694,0.000356237],"study_design_scores_gemma":[0.0009785895,0.0003008911,0.897812,0.00001275313,0.0001677353,0.00001179261,0.001638823,0.000147172,0.09751467,0.0004288328,0.0007027382,0.0002839945],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959279,0.000592032,0.002224009,0.00002231258,0.0002717657,0.0004926898,0.0001889305,0.0000323779,0.0002480091],"genre_scores_gemma":[0.996338,0.000118301,0.002660149,0.00004433622,0.00008879462,0.00002760681,0.0004594781,0.00001783813,0.000245531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7293816,"threshold_uncertainty_score":0.8157811,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02819166819165794,"score_gpt":0.2627029062781689,"score_spread":0.2345112380865109,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}