{"id":"W2097231104","doi":"10.3201/eid1512.090178","title":"Delineating<i>Anaplasma phagocytophilum</i>Ecotypes in Coexisting, Discrete Enzootic Cycles","year":2009,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":121,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"University of Liverpool; Wellcome Trust","keywords":"Anaplasma phagocytophilum; Biology; Ixodes ricinus; Enzootic; Ricinus; Anaplasma; Anaplasmosis; Genotype; Population; Tick; Anaplasmataceae; Ixodes; Host (biology); Zoology; Virology; Borrelia burgdorferi; Ecology; Genetics; Gene; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001797503,0.0005161064,0.0005898922,0.0004918852,0.0004692957,0.00008045752,0.0003098876,0.0002158543,0.0009029677],"category_scores_gemma":[0.0009577257,0.0005217595,0.000301453,0.0005952093,0.0002161826,0.0003022157,0.00008614773,0.0004270195,0.0005810726],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002278343,"about_ca_system_score_gemma":0.0001614685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006098974,"about_ca_topic_score_gemma":0.0006695228,"domain_scores_codex":[0.9972445,0.0003380261,0.0006869357,0.0007343593,0.0001125557,0.0008835946],"domain_scores_gemma":[0.9986608,0.0003152726,0.000267028,0.000507508,0.0001229426,0.0001264612],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002775517,0.001740739,0.9513397,0.00009454955,0.0003764062,0.0001498087,0.0005361806,0.004304267,0.009636853,0.002077341,0.008164787,0.02130181],"study_design_scores_gemma":[0.0068397,0.001316784,0.9608926,0.0004135047,0.0006159974,0.0003510431,0.0003518162,0.0005394667,0.005411732,0.005916153,0.01536418,0.001987023],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9851716,0.007399928,0.0002516466,0.0003875708,0.00108005,0.0004486207,0.000104956,0.001097245,0.004058356],"genre_scores_gemma":[0.9980513,0.000154783,0.00002832763,0.0007142531,0.0002135797,0.00006320253,0.0002284338,0.00005466549,0.0004913854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01931479,"threshold_uncertainty_score":0.9997234,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009123632285255838,"score_gpt":0.2640593799191046,"score_spread":0.2549357476338488,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}