{"id":"W2097261465","doi":"10.1093/gbe/evu067","title":"Comparative Genomics of Taphrina Fungi Causing Varying Degrees of Tumorous Deformity in Plants","year":2014,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"U.S. Forest Service","keywords":"Biology; Synteny; Mycology; Botany; Comparative genomics; Genome; Genetics; Evolutionary biology; Genomics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005824976,0.0002180954,0.0002274312,0.0004619375,0.0001722305,0.0002766599,0.0001233627,0.0001905975,0.0005301893],"category_scores_gemma":[0.00008999237,0.0001020553,0.0002367614,0.0004418296,0.0001013,0.0001497027,0.0002213957,0.000266915,0.000191085],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001953243,"about_ca_system_score_gemma":0.0001196231,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001249095,"about_ca_topic_score_gemma":0.001538427,"domain_scores_codex":[0.9999461,0.000006043877,0.000003380361,0.00001937805,0.00001127524,0.00001383639],"domain_scores_gemma":[0.9998826,0.00002630537,0.0000353644,0.000009428759,0.00001342306,0.0000327683],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008142208,0.00001147721,0.0009967309,0.0000238652,0.000006417316,0.00009239882,0.00005542637,0.00006011847,0.997438,0.00002934809,0.00001240721,0.001192432],"study_design_scores_gemma":[0.0000302367,0.0006195775,0.7643947,0.00003622758,0.0001517587,0.002584746,0.000880339,0.002668423,0.2239096,0.0003936949,0.004299445,0.00003124785],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973482,0.0003460061,0.000600934,0.00002305179,0.00000245456,0.000009006709,0.0009999237,0.00002144082,0.0006489261],"genre_scores_gemma":[0.9953916,0.0003142462,0.0009353027,0.00004484177,0.0000038531,0.00001227109,0.002541042,0.00001827007,0.0007385276],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001249095,"threshold_uncertainty_score":0.002483606,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01588152685539316,"score_gpt":0.248672323684942,"score_spread":0.2327907968295489,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}