{"id":"W2097455861","doi":"10.1101/gr.4023805","title":"Survey of allelic expression using EST mining","year":2005,"lang":"en","type":"article","venue":"Genome Research","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":131,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre","funders":"Canadian Institutes of Health Research; Genome Canada; Burroughs Wellcome Fund","keywords":"International HapMap Project; Biology; Genetics; Allele; Linkage disequilibrium; In silico; Gene; Allele frequency; Population; Genetic variation; Haplotype; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002571578,0.00006878152,0.0001375254,0.00008339366,0.0001136309,0.000007299341,0.0002012242,0.0001425186,0.00005951335],"category_scores_gemma":[0.0006714787,0.00006515755,0.00003844183,0.0001649502,0.00009067953,0.000001682542,0.0002185514,0.00009848014,0.00001746125],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002711986,"about_ca_system_score_gemma":0.0001404285,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003046316,"about_ca_topic_score_gemma":0.0002350558,"domain_scores_codex":[0.9984803,0.000519141,0.0002278104,0.0002394738,0.0001772226,0.0003560648],"domain_scores_gemma":[0.9991654,0.0000918216,0.00006433598,0.000297617,0.0003096179,0.00007125885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002296524,0.00004300967,0.07517304,0.0000078968,0.00002023543,3.702477e-7,0.00008440831,0.00176547,0.919215,0.000003607739,0.0008205277,0.002843451],"study_design_scores_gemma":[0.0004618292,0.0002718149,0.9229198,0.00001470878,0.000004923468,0.000005624022,0.0002512261,0.002127742,0.05147392,0.00002637875,0.02224878,0.0001933094],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958706,0.001762059,0.001089063,0.00008992701,0.00002336338,0.00009731831,0.00001855982,0.000002582587,0.001046458],"genre_scores_gemma":[0.991193,0.0002620713,0.007703029,0.00002472333,0.0001682392,0.000006807156,0.0001001452,0.00001300877,0.0005289652],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8677411,"threshold_uncertainty_score":0.2657048,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.169141137309708,"score_gpt":0.4223458715252558,"score_spread":0.2532047342155478,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}