{"id":"W2097623920","doi":"10.1128/mbio.00075-15","title":"Secretome Analysis of Vibrio cholerae Type VI Secretion System Reveals a New Effector-Immunity Pair","year":2015,"lang":"en","type":"article","venue":"mBio","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Type VI secretion system; Vibrio cholerae; Biology; Effector; Microbiology; Escherichia coli; Secretion; Periplasmic space; Vibrio; Virulence; Bacteria; Cell biology; Biochemistry; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001344913,0.0003246797,0.0002923604,0.0008469255,0.0002221247,0.0004610223,0.0002000793,0.0003101971,0.001100039],"category_scores_gemma":[0.0002206228,0.0000798583,0.000532158,0.0008402431,0.0001331334,0.0003570578,0.0003302015,0.0003393102,0.0004462439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003025647,"about_ca_system_score_gemma":0.0002385751,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007529929,"about_ca_topic_score_gemma":0.0006055209,"domain_scores_codex":[0.9998871,0.000005986416,0.000008984165,0.00003630347,0.00003855672,0.00002310159],"domain_scores_gemma":[0.9998606,0.00001897536,0.00004535569,0.00001075781,0.00003805582,0.00002621126],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000420544,0.00006709234,0.01829096,0.0001819281,0.00005720674,0.0004751968,0.00008961258,0.0004270951,0.9701748,0.0002022538,0.0003968891,0.009216408],"study_design_scores_gemma":[0.00005609992,0.0006978411,0.3848756,0.00005190404,0.0002806501,0.003348184,0.0005729037,0.03887835,0.5526971,0.001525171,0.01694901,0.00006720515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893817,0.001005862,0.003842407,0.0001679506,0.00003572342,0.0000332449,0.004363797,0.0001542126,0.001015177],"genre_scores_gemma":[0.9717975,0.0007912189,0.01136378,0.0001227539,0.00002871518,0.00003963806,0.01452351,0.0000508322,0.001282048],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001100039,"threshold_uncertainty_score":0.003679991,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02939324758815949,"score_gpt":0.2934138335529702,"score_spread":0.2640205859648107,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}