{"id":"W2097725880","doi":"10.1128/jvi.78.1.76-82.2004","title":"Mosaic Evolution of the Severe Acute Respiratory Syndrome Coronavirus","year":2003,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":144,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Coronavirus; Virology; Phylogenetic tree; Virus; Feline infectious peritonitis; Phylogenetics; Novel virus; Gene; Genetics; Genome; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002944859,0.00006911387,0.0001845013,0.00001390829,0.0001489195,0.000003805342,0.0001683584,0.00008130776,0.0001739469],"category_scores_gemma":[0.0001128726,0.00002134842,0.0001340975,0.0001987644,0.000153011,0.00006853198,0.00004157149,0.0001812946,0.00001132539],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006003556,"about_ca_system_score_gemma":0.00002090816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002617091,"about_ca_topic_score_gemma":0.0001063498,"domain_scores_codex":[0.9991853,0.0002021327,0.0002810699,0.00007103898,0.0001327285,0.0001276899],"domain_scores_gemma":[0.999379,0.0001054878,0.0003449851,0.00003793693,0.0001035259,0.00002911163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001382875,0.0001977729,0.23513,0.00000422976,0.0002156718,0.0000334566,0.00005961088,0.00007080908,0.7546612,0.004295823,0.002407856,0.002785259],"study_design_scores_gemma":[0.0001846632,0.001474072,0.9557839,0.000009593416,0.00006462369,0.001141987,0.0001179834,0.00000131942,0.001947488,0.002152232,0.03705617,0.00006598563],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977633,0.0008190747,0.000007578946,0.00029708,0.0003042384,0.00004933634,0.00001232619,0.000004352196,0.0007427265],"genre_scores_gemma":[0.9995729,0.00004752153,0.00002875883,0.0002080058,0.00005168947,0.000001096819,1.189623e-7,5.035188e-7,0.00008935015],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7527137,"threshold_uncertainty_score":0.1904596,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02742932019748756,"score_gpt":0.2476778029687324,"score_spread":0.2202484827712448,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}