{"id":"W2097737985","doi":"10.5858/2005-129-39-cnaocn","title":"Copy Number Analysis of c-erb-B2 (HER-2/neu) and Topoisomerase IIα Genes in Breast Carcinoma by Quantitative Real-Time Polymerase Chain Reaction Using Hybridization Probes and Fluorescence In Situ Hybridization","year":2005,"lang":"en","type":"article","venue":"Archives of Pathology & Laboratory Medicine","topic":"Cancer therapeutics and mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Fluorescence in situ hybridization; Gene duplication; Breast carcinoma; Gene dosage; Real-time polymerase chain reaction; Copy-number variation; Breast cancer; Polymerase chain reaction; Biology; Gene; Molecular biology; Concordance; Cancer research; Cancer; Gene expression; Bioinformatics; Genetics; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00117281,0.0004619186,0.0002359692,0.0007824588,0.0001261737,0.0004235408,0.0004834625,0.0005246671,0.0006320502],"category_scores_gemma":[0.00200194,0.0003664486,0.000229626,0.0003675648,0.0006365354,0.0003519024,0.0002125193,0.0004322254,0.0002389068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004072614,"about_ca_system_score_gemma":0.0001701637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003349983,"about_ca_topic_score_gemma":0.0004794736,"domain_scores_codex":[0.9987934,0.0002871688,0.00007426663,0.0004060751,0.0003736357,0.00006543745],"domain_scores_gemma":[0.9987405,0.0006773058,0.000275516,0.0001121713,0.0001620593,0.00003245517],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001415347,0.00003654422,0.00588487,0.00006440539,0.00001776609,0.00004502374,0.0000790235,0.0003054906,0.9882396,0.00005998075,0.00001860694,0.005107162],"study_design_scores_gemma":[0.00002523571,0.0005139358,0.02907193,0.00001520206,0.00006125284,0.0008636705,0.00007217569,0.006924705,0.9615185,0.0001474002,0.0007634422,0.00002270472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9147567,0.00158093,0.08192119,0.00009673482,0.0000313493,0.000112642,0.0004047273,0.0002972037,0.0007986074],"genre_scores_gemma":[0.8863566,0.0008804225,0.1103161,0.00007813539,0.00002876552,0.0003641912,0.00069819,0.00003762265,0.001240024],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00117281,"threshold_uncertainty_score":0.006202519,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00728170723618935,"score_gpt":0.2659248941062024,"score_spread":0.258643186870013,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}