{"id":"W2097737985","doi":"10.5858/2005-129-39-cnaocn","title":"Copy Number Analysis of c-erb-B2 (HER-2/neu) and Topoisomerase IIα Genes in Breast Carcinoma by Quantitative Real-Time Polymerase Chain Reaction Using Hybridization Probes and Fluorescence In Situ Hybridization","year":2005,"lang":"en","type":"article","venue":"Archives of Pathology & Laboratory Medicine","topic":"Cancer therapeutics and mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Fluorescence in situ hybridization; Gene duplication; Breast carcinoma; Gene dosage; Real-time polymerase chain reaction; Copy-number variation; Breast cancer; Polymerase chain reaction; Biology; Gene; Molecular biology; Concordance; Cancer research; Cancer; Gene expression; Bioinformatics; Genetics; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002328406,0.0001425745,0.0003466228,0.000265461,0.00002981397,0.000002664242,0.00005694221,0.00007025205,0.000006136968],"category_scores_gemma":[0.00003395097,0.000139307,0.00002386444,0.0003776395,0.0003256042,0.0000153513,0.0000373699,0.00006322858,1.178337e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001556957,"about_ca_system_score_gemma":0.00007074556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003167134,"about_ca_topic_score_gemma":0.0003500152,"domain_scores_codex":[0.9988796,0.0001996082,0.0003561195,0.0003288514,0.00008718628,0.0001487011],"domain_scores_gemma":[0.9994459,0.00004632042,0.0002178471,0.0001656499,0.00007046168,0.00005388543],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002213795,0.00008185816,0.06481573,0.00003031424,0.00005839676,0.00001269355,0.0008968625,0.00008663989,0.9308821,0.0001262123,0.000005077411,0.002782766],"study_design_scores_gemma":[0.00160093,0.0003306468,0.07884517,0.00008712899,0.0002305879,0.00004339905,0.0005736914,0.004421782,0.9135727,0.00005819807,0.00005205064,0.0001837527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961752,0.002170126,0.001108898,0.0002011737,0.00002546381,0.0001648436,0.0001170309,0.000003899656,0.00003333603],"genre_scores_gemma":[0.9950386,0.0030183,0.001537904,0.00008718159,0.00003665351,0.000008625858,0.0002488589,0.00001371305,0.00001015836],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0173094,"threshold_uncertainty_score":0.5680774,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00728170723618935,"score_gpt":0.2659248941062024,"score_spread":0.258643186870013,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}