{"id":"W2097758894","doi":"10.1186/gb-2009-10-10-r106","title":"Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions","year":2009,"lang":"en","type":"article","venue":"Genome biology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Canadian Institutes of Health Research; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fonds Québécois de la Recherche sur la Nature et les Technologies; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Génome Québec; Canadian Institute for Advanced Research; Michael Smith Health Research BC; National Science Foundation","keywords":"Biology; Genome; Genetics; Gene; Human genetics; Parasite hosting; Daphnia; Whole genome sequencing; Host (biology); GC-content; Genomics; Computational biology; Evolutionary biology; Zoology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000199895,0.0002046248,0.0002746664,0.00005526091,0.0001686786,0.000008323929,0.0004006911,0.0001753055,0.000004913383],"category_scores_gemma":[0.00004297267,0.000136896,0.0001691868,0.0001143903,0.0003103463,0.000004849438,0.0001671345,0.0001004546,0.00000111983],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002881406,"about_ca_system_score_gemma":0.0001343242,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003347466,"about_ca_topic_score_gemma":0.0002933596,"domain_scores_codex":[0.9987442,0.00007731303,0.0004201014,0.000392442,0.00006342288,0.000302491],"domain_scores_gemma":[0.9988649,0.00001845701,0.0002680243,0.0005588943,0.0002122271,0.00007745664],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009116013,0.00006520553,0.0009408894,0.00001414332,0.00006690733,3.668777e-7,0.001127087,0.000383575,0.9961842,0.0009791245,0.000007011053,0.0001403811],"study_design_scores_gemma":[0.005356966,0.0036968,0.6037273,0.00004860018,0.0004324563,0.0002061943,0.00134746,0.03027092,0.1688313,0.006613995,0.1777433,0.001724697],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9723058,0.004894765,0.02080127,0.0004771005,0.0001249902,0.0006029609,0.0007310444,0.00000689471,0.00005511861],"genre_scores_gemma":[0.994957,0.001046202,0.001862683,0.0008013942,0.00008598455,0.00003574607,0.0006347653,0.00001601826,0.0005601617],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8273528,"threshold_uncertainty_score":0.5582458,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01791919668897496,"score_gpt":0.2735552952280527,"score_spread":0.2556360985390777,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}