{"id":"W2097946039","doi":"10.1128/jb.01224-06","title":"Glycosylation of <i>Pseudomonas aeruginosa</i> Strain Pa5196 Type IV Pilins with Mycobacterium-Like α-1,5-Linked <scp>d</scp> -Ara <i>f</i> Oligosaccharides","year":2006,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Toronto; Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Colorado State University","keywords":"Biology; Pilin; Microbiology; Pilus; Lipoarabinomannan; Glycan; Mycobacterium; Bacterial adhesin; Glycosylation; Mycobacterium tuberculosis; Bacteria; Virulence; Biochemistry; Glycoprotein; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003530502,0.0003301864,0.000625775,0.000181121,0.00006443706,0.00003122429,0.0004273377,0.0006252186,0.00002113954],"category_scores_gemma":[0.0001186976,0.0002636821,0.000184747,0.0002263427,0.0003341889,0.0000172029,0.0001259972,0.0003174459,0.000006215937],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002723302,"about_ca_system_score_gemma":0.0002857303,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004285016,"about_ca_topic_score_gemma":0.00008988358,"domain_scores_codex":[0.9979411,0.0001432302,0.000938952,0.0003549304,0.0001840779,0.0004377197],"domain_scores_gemma":[0.9977832,0.00006418264,0.00108659,0.0004054056,0.0005507467,0.0001098599],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004094,0.0001579863,0.006848163,0.0000314157,0.0001399092,0.00002575018,0.00002674661,0.00008797003,0.9904093,0.0001356723,0.0009523181,0.0007753297],"study_design_scores_gemma":[0.00286633,0.007399566,0.1025581,0.00008310464,0.0001838696,0.001263889,0.0001067317,0.00002658314,0.7451105,0.0004755562,0.1396131,0.0003126966],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972245,0.000613684,0.0005647928,0.0001952419,0.0008235844,0.000179664,0.00009719178,0.00001369858,0.0002876219],"genre_scores_gemma":[0.9947675,0.0006759565,0.003072128,0.0002047136,0.0008461514,0.000003712413,0.0002097826,0.00004143691,0.0001786387],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2452989,"threshold_uncertainty_score":0.9999815,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007427442662156539,"score_gpt":0.2125877844803405,"score_spread":0.2051603418181839,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}