{"id":"W2097962479","doi":"10.1093/glycob/cwt071","title":"Lactobacillus plantarum WCFS1 O-linked protein glycosylation: An extended spectrum of target proteins and modification sites detected by mass spectrometry","year":2013,"lang":"en","type":"article","venue":"Glycobiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"Norges Forskningsråd; Universitetet i Oslo","keywords":"Glycan; Biochemistry; Peptidoglycan; Translocase; Glycoprotein; Chemistry; Glycosylation; Lactobacillus plantarum; Proteome; Biology; Bacteria; Enzyme; Lactic acid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002757048,0.0003024692,0.0003318738,0.0001958205,0.0001364981,0.0000480549,0.000310556,0.0004399273,0.0005571843],"category_scores_gemma":[0.0001857278,0.0002787,0.00007385374,0.0002694537,0.0002745379,0.00003247822,0.0001128479,0.0002452774,0.00005983636],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003664028,"about_ca_system_score_gemma":0.00009475555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003019955,"about_ca_topic_score_gemma":0.0001025894,"domain_scores_codex":[0.9977764,0.0002862325,0.0004729678,0.0007056124,0.0002135393,0.0005451926],"domain_scores_gemma":[0.9987295,0.0000240252,0.0002366877,0.0005899774,0.0002060789,0.0002137485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003511546,0.0001360813,0.00271093,0.00003902119,0.00006750311,0.000001970866,0.00002775435,0.00000840991,0.9952049,0.0003797956,0.0002420068,0.0008304187],"study_design_scores_gemma":[0.001360316,0.002044308,0.02245773,0.00001203955,0.0000128972,0.00003707811,0.00006776954,0.001023605,0.9669343,0.002588347,0.003073691,0.0003879734],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870467,0.0005373819,0.009143056,0.00051489,0.00005039023,0.001803688,0.0001747297,0.00005238587,0.000676741],"genre_scores_gemma":[0.990607,0.00007132955,0.006504533,0.00005766876,0.0001338494,0.0002885872,0.001674406,0.00003633006,0.0006263607],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02827071,"threshold_uncertainty_score":0.9999665,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01259222063303706,"score_gpt":0.2516661621299677,"score_spread":0.2390739414969306,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}