{"id":"W2097962479","doi":"10.1093/glycob/cwt071","title":"Lactobacillus plantarum WCFS1 O-linked protein glycosylation: An extended spectrum of target proteins and modification sites detected by mass spectrometry","year":2013,"lang":"en","type":"article","venue":"Glycobiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"Norges Forskningsråd; Universitetet i Oslo","keywords":"Glycan; Biochemistry; Peptidoglycan; Translocase; Glycoprotein; Chemistry; Glycosylation; Lactobacillus plantarum; Proteome; Biology; Bacteria; Enzyme; Lactic acid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001352843,0.0006814799,0.0002663501,0.000562571,0.0002562802,0.0003923401,0.0001582896,0.0002967021,0.0005206555],"category_scores_gemma":[0.0001510958,0.0001292466,0.0002967024,0.0007241423,0.000136516,0.0001607856,0.0003090992,0.0002864906,0.0003053096],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001892269,"about_ca_system_score_gemma":0.0001823595,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001704497,"about_ca_topic_score_gemma":0.001316644,"domain_scores_codex":[0.9998196,0.00001325644,0.00001021541,0.00003163772,0.0000801858,0.00004504743],"domain_scores_gemma":[0.9999121,0.000007893898,0.00002817228,0.00000638881,0.00002294207,0.00002255004],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001173204,0.00001350439,0.001313474,0.00002415294,0.00000720944,0.0001421464,0.00001852107,0.00002873098,0.9963809,0.00001653671,0.00006374641,0.001873731],"study_design_scores_gemma":[0.00001606937,0.0002186052,0.06741116,0.000024826,0.00004828838,0.001746414,0.0001560502,0.001587034,0.9222133,0.00009202478,0.006457027,0.00002928556],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913793,0.001424688,0.003223141,0.00009744791,0.00002832871,0.00002910224,0.001906591,0.0001461532,0.001765273],"genre_scores_gemma":[0.9831843,0.001440557,0.008666047,0.0001492085,0.00001841322,0.00004624159,0.003841915,0.00007137111,0.002581987],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001704497,"threshold_uncertainty_score":0.00338918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01259222063303706,"score_gpt":0.2516661621299677,"score_spread":0.2390739414969306,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}