{"id":"W2097978957","doi":"10.1093/infdis/jiu349","title":"Whole-Genome Scans Provide Evidence of Adaptive Evolution in Malawian Plasmodium falciparum Isolates","year":2014,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Malaria Research and Control","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; Centre in Green Chemistry and Catalysis; Wellcome Trust","keywords":"Plasmodium falciparum; Biology; Genome; Virology; Genetics; Adaptive evolution; Evolutionary biology; Computational biology; Malaria; Gene; Immunology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003723744,0.0002367257,0.0002163125,0.0008274118,0.0003897421,0.0004598128,0.0002400851,0.0003570974,0.001690386],"category_scores_gemma":[0.001723439,0.0001900745,0.0002101903,0.001054687,0.0004051022,0.0002420814,0.000439815,0.0003679096,0.0001345198],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00021772,"about_ca_system_score_gemma":0.0001529835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004229201,"about_ca_topic_score_gemma":0.008786162,"domain_scores_codex":[0.9998053,0.00006471883,0.0000113867,0.00005299296,0.00002445995,0.00004112947],"domain_scores_gemma":[0.9992224,0.0003801461,0.0002039808,0.0000558903,0.00007869425,0.00005890252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005700773,0.00006161304,0.8918871,0.0002213698,0.0008965684,0.0006384462,0.001723684,0.001925237,0.0805058,0.000433255,0.0006586675,0.02047814],"study_design_scores_gemma":[0.00001184746,0.00003872112,0.9960843,0.00001142304,0.0001003374,0.0004442844,0.0002595957,0.0008527677,0.001229598,0.0001271461,0.0008359373,0.000003950421],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987239,0.0002744429,0.0002908793,0.00003812917,0.000001103836,0.000003764384,0.0004164454,0.000009889279,0.0002414068],"genre_scores_gemma":[0.9984015,0.000141084,0.0005636881,0.00004999007,0.000003845868,0.000007034179,0.0007238812,0.000004681205,0.0001044019],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004229201,"threshold_uncertainty_score":0.008409142,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01456888719616271,"score_gpt":0.2697686189720835,"score_spread":0.2551997317759208,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}