{"id":"W2098130939","doi":"10.1186/1471-2164-12-365","title":"Integration of Genome-Wide Computation DRE Search, AhR ChIP-chip and Gene Expression Analyses of TCDD-Elicited Responses in the Mouse Liver","year":2011,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Toxic Organic Pollutants Impact","field":"Environmental Science","cited_by":134,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Institute of Environmental Health Sciences; Canadian Institutes of Health Research","keywords":"Biology; DNA microarray; Genome; Gene expression; Gene; Computational biology; Genetics; Gene expression profiling; Microarray","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002745175,0.0003482972,0.0004859591,0.0007235573,0.0001391587,0.0002346241,0.0002851458,0.0001773536,0.001168273],"category_scores_gemma":[0.0001553301,0.0001708534,0.0004878313,0.0006199388,0.0001916673,0.0001335148,0.0003245519,0.0003685145,0.0003029515],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003394246,"about_ca_system_score_gemma":0.0003218054,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001090183,"about_ca_topic_score_gemma":0.002467751,"domain_scores_codex":[0.9998153,0.0000112368,0.000008849473,0.00007681385,0.00005902589,0.00002886594],"domain_scores_gemma":[0.9998649,0.00002811531,0.00002790886,0.00001986026,0.00003704651,0.00002207124],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001885994,0.00003102146,0.005137892,0.00007998781,0.00002843642,0.00002857992,0.00001127354,0.000560914,0.9888291,0.00009082739,0.00008123482,0.004932265],"study_design_scores_gemma":[0.00004196618,0.0003915109,0.1881192,0.00001054691,0.0001382921,0.0003153949,0.00004408049,0.009802169,0.7986844,0.0002633102,0.002160168,0.0000290712],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9586965,0.0008618892,0.03263434,0.00006290582,0.00001220793,0.00005705974,0.005905048,0.0008365675,0.0009335011],"genre_scores_gemma":[0.9362712,0.0006832677,0.04447495,0.0001136283,0.00001169813,0.0002028633,0.01496467,0.0001077697,0.003169848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001168273,"threshold_uncertainty_score":0.003908277,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07889284891379508,"score_gpt":0.291008110770989,"score_spread":0.2121152618571939,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}