{"id":"W2098338248","doi":"10.1099/ijs.0.010199-0","title":"'Candidatus Planktophila limnetica', an actinobacterium representing one of the most numerically important taxa in freshwater bacterioplankton","year":2009,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Österreichischen Akademie der Wissenschaften; Nova Scotia Health Research Foundation","keywords":"Actinobacteria; Biology; Bacterioplankton; Lineage (genetic); Taxon; Phylogenetic tree; Ecology; Phylum; 16S ribosomal RNA; Strain (injury); Candidatus; Botany; Bacteria; Phytoplankton; Gene; Nutrient; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003114972,0.0001139883,0.0003076833,0.00007420903,0.00003688421,0.00001388738,0.0003347936,0.00009282227,0.00001253564],"category_scores_gemma":[0.0001159516,0.0000782363,0.00007925172,0.00004343091,0.0001013105,0.000004912597,0.0001016343,0.00009551359,5.068206e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002418469,"about_ca_system_score_gemma":0.00006589858,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001931021,"about_ca_topic_score_gemma":0.0000272253,"domain_scores_codex":[0.9986902,0.0001365234,0.0007847475,0.0001543284,0.00009411291,0.0001400559],"domain_scores_gemma":[0.9989123,0.00002914255,0.0006243199,0.0001694021,0.0002261404,0.00003867898],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001710705,0.0001046067,0.02950691,0.0001159791,0.0001448926,0.0000075548,0.0001271782,0.00004198872,0.9695605,0.00004983437,0.0001316666,0.00003781941],"study_design_scores_gemma":[0.002982825,0.00219088,0.8848186,0.003161732,0.0001943371,0.005937348,0.0008089658,0.0002100035,0.09485957,0.001179895,0.003086434,0.000569419],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971414,0.001600309,0.0000582206,0.0005404069,0.0003783105,0.0001479769,0.00007553782,7.517645e-7,0.0000571308],"genre_scores_gemma":[0.9984969,0.0003415755,0.0007563315,0.0001507318,0.0001842064,0.00000251078,0.00002598971,0.000005466075,0.00003628702],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8747009,"threshold_uncertainty_score":0.3190384,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009455493485386476,"score_gpt":0.2295137735196334,"score_spread":0.2200582800342469,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}