{"id":"W2098412954","doi":"10.1093/hmg/ddp033","title":"Gene-body hypermethylation of ATM in peripheral blood DNA of bilateral breast cancer patients","year":2009,"lang":"en","type":"article","venue":"Human Molecular Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":143,"is_retracted":false,"has_abstract":true,"ca_institutions":"Coalition for Research in Women's Health; University of Toronto; Centre for Addiction and Mental Health","funders":"National Institute for Health and Care Research; University College London; Cancer Research UK","keywords":"Breast cancer; DNA methylation; Biology; CDKN2A; Epigenetics; Cancer; MLH1; Methylation; GSTP1; Carcinogenesis; Genetic predisposition; Cancer research; Oncology; Genetics; Internal medicine; Gene; Medicine; Genotype; Colorectal cancer; Gene expression; DNA mismatch repair","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001072987,0.0001834762,0.0002852828,0.0005640771,0.0002350294,0.000242158,0.00009624208,0.0002077402,0.001682851],"category_scores_gemma":[0.0006202698,0.0001662081,0.0001047225,0.0003731615,0.000167036,0.00009411322,0.0001678452,0.0001909327,0.00020691],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001334224,"about_ca_system_score_gemma":0.00007598522,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001113452,"about_ca_topic_score_gemma":0.00110683,"domain_scores_codex":[0.9998553,0.00002517319,0.00001028334,0.00006140724,0.00002721839,0.00002073429],"domain_scores_gemma":[0.9998139,0.00004454673,0.00006647979,0.00001679304,0.00001764762,0.00004072942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001254921,0.0000678099,0.9198897,0.00003967943,0.00006206668,0.0006646528,0.0003038719,0.00007605177,0.06963265,0.00002755774,0.00009822701,0.007882698],"study_design_scores_gemma":[0.00001174289,0.0003059203,0.9939967,0.000002496513,0.00002880516,0.002297162,0.0001146617,0.0001151905,0.002906218,0.00002861059,0.0001889893,0.000003318938],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999663,0.00008607825,0.00007135586,0.000005143426,9.391409e-7,0.000001619912,0.00007777559,0.000003023145,0.00009111543],"genre_scores_gemma":[0.9995663,0.00004160303,0.00008528454,0.000007332483,0.00000247859,0.000003011131,0.0001257087,0.00000135503,0.0001668988],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001682851,"threshold_uncertainty_score":0.005629659,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006883930521021423,"score_gpt":0.257743632041446,"score_spread":0.2508597015204246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}