{"id":"W2098681440","doi":"10.1128/mbio.00631-12","title":"Five New Genes Are Important for Common Polysaccharide Antigen Biosynthesis in Pseudomonas aeruginosa","year":2013,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Research and Innovation; Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Gene cluster; Pseudomonas aeruginosa; Operon; Gene; Biosynthesis; Biology; Microbiology; Bacterial outer membrane; Bacteria; Mutant; Antigen; Polysaccharide; Genetics; Biochemistry; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008823068,0.0001716579,0.0002143305,0.0000470712,0.00006060505,0.00005132476,0.000139154,0.0001844218,0.00004465974],"category_scores_gemma":[0.00004136981,0.0001567692,0.0001068484,0.0000654072,0.00003571984,0.000006674928,0.00007186575,0.00004872105,0.00001999648],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001204063,"about_ca_system_score_gemma":0.00005136071,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002397991,"about_ca_topic_score_gemma":0.0008237191,"domain_scores_codex":[0.9989874,0.00002417482,0.0002728414,0.0003289248,0.00005929809,0.0003273675],"domain_scores_gemma":[0.9994349,0.00001551987,0.0001223783,0.0002838725,0.00004157662,0.0001017624],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004187569,0.00002894168,0.01578565,0.000008888675,0.00002369968,0.000003248489,0.00003588234,9.797079e-7,0.9704008,0.0000175063,0.003943651,0.009708948],"study_design_scores_gemma":[0.0004022178,0.00009300625,0.03403537,0.00002548958,0.00001022964,0.00001174188,0.0001422024,0.00004176899,0.9519985,0.00007645415,0.01291744,0.000245561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973357,0.0008602087,0.00003281838,0.001081539,0.0002071952,0.0003554894,0.00004508053,0.00001419919,0.00006774713],"genre_scores_gemma":[0.9965436,0.0003118031,0.00182837,0.0004616595,0.0003506423,0.00001625185,0.00007160919,0.0000258652,0.0003901985],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01840221,"threshold_uncertainty_score":0.6392861,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01105749827201211,"score_gpt":0.233357680819031,"score_spread":0.2223001825470189,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}