{"id":"W2099146841","doi":"10.1109/tnb.2015.2419194","title":"A Framework of De Novo Peptide Sequencing for Multiple Tandem Mass Spectra","year":2015,"lang":"en","type":"article","venue":"IEEE Transactions on NanoBioscience","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Electron-transfer dissociation; Tandem mass spectrometry; Fragmentation (computing); Tandem; Chemistry; Mass spectrometry; Spectral line; Mass spectrum; Dissociation (chemistry); Peptide; Computer science; Physics; Chromatography; Materials science; Physical chemistry; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002334513,0.001177591,0.001216602,0.001456354,0.0007198406,0.001399924,0.002207372,0.001052992,0.001067662],"category_scores_gemma":[0.002958154,0.0007302747,0.001509319,0.001161296,0.0008551108,0.001536034,0.002233581,0.001607327,0.0005255445],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008293059,"about_ca_system_score_gemma":0.002098759,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003655009,"about_ca_topic_score_gemma":0.003607098,"domain_scores_codex":[0.9979645,0.0004595248,0.0001169778,0.000643457,0.000694845,0.0001207507],"domain_scores_gemma":[0.9987335,0.0004819995,0.0001753821,0.0002274009,0.0002777354,0.0001040112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002225108,0.0001596343,0.001288034,0.0006313152,0.0001940977,0.001076437,0.0003436075,0.3205176,0.06148665,0.07567487,0.00396346,0.5344418],"study_design_scores_gemma":[0.00001993641,0.00006545331,0.0002840089,0.00002807176,0.00002447797,0.0003584226,0.00003085404,0.9561644,0.009145553,0.02425607,0.009585983,0.00003675565],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.0009320789,0.000164719,0.9983211,0.0000246132,0.00001277516,0.00003125196,0.00002602349,0.0003230423,0.0001642951],"genre_scores_gemma":[0.02915391,0.0002684048,0.9695627,0.00004660484,0.00003068909,0.00007898546,0.000219275,0.00009174811,0.0005476777],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003655009,"threshold_uncertainty_score":0.01234627,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03941688970829456,"score_gpt":0.3020163390864356,"score_spread":0.2625994493781411,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}