{"id":"W2099214157","doi":"10.1089/108729001753231713","title":"CpG Motif Identification for Veterinary and Laboratory Species Demonstrates That Sequence Recognition Is Highly Conserved","year":2001,"lang":"en","type":"article","venue":"Antisense and Nucleic Acid Drug Development","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":234,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Immunostimulant; CpG Oligodeoxynucleotide; CpG site; Computational biology; Immune system; Conserved sequence; In vitro; DNA sequencing; Sequence motif; DNA; Immunology; Genetics; Gene; Base sequence; DNA methylation; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003600201,0.0001781732,0.0001991109,0.0001103606,0.0004188603,0.00005988529,0.00006470582,0.0001337937,0.00009307882],"category_scores_gemma":[0.0000378566,0.0001717065,0.00002975607,0.00009125131,0.0001911518,0.0002877748,0.00004736067,0.00008849736,0.0001308558],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000277857,"about_ca_system_score_gemma":0.00008368111,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000011018,"about_ca_topic_score_gemma":0.000006219292,"domain_scores_codex":[0.9989804,0.0001097041,0.0003240139,0.0003049679,0.00004004898,0.0002408857],"domain_scores_gemma":[0.9994681,0.0001045915,0.0001470753,0.0001366061,0.0001180162,0.00002559884],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000283321,0.0000304014,0.002200248,0.00004944081,0.00008538314,0.00001368183,0.001435855,3.882547e-8,0.9600421,0.00006686238,0.00255546,0.03323717],"study_design_scores_gemma":[0.0008034005,0.00006123303,0.04585652,0.00008333614,0.00003192424,0.0001717757,0.000852307,0.0000112864,0.884097,0.0001644732,0.06762689,0.0002398679],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960089,0.002184358,0.0001886549,0.0008403699,0.0002580686,0.0003224236,0.00003733003,0.00006170353,0.0000982151],"genre_scores_gemma":[0.9944644,0.002661301,0.0005641512,0.0002702851,0.00001682795,0.00005508921,0.0002639528,0.00001507234,0.001688912],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07594515,"threshold_uncertainty_score":0.7001989,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04572298829093271,"score_gpt":0.2480118923916766,"score_spread":0.2022889041007439,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}