{"id":"W2099326239","doi":"10.1038/ng.2568","title":"Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution","year":2013,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":652,"is_retracted":false,"has_abstract":true,"ca_institutions":"Sunnybrook Health Science Centre; University of Toronto","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Center for Research Resources; National Institute of Dental and Craniofacial Research; National Science Foundation; University of Washington; Canadian Institutes of Health Research; College of Engineering, Michigan State University; New Hampshire Agricultural Experiment Station; Natural Sciences and Engineering Research Council of Canada; National Human Genome Research Institute; Wellcome Trust; U.S. Geological Survey; Stowers Institute for Medical Research; National Institute of Neurological Disorders and Stroke; National Institute of General Medical Sciences; University of Utah; Michigan State University; National Institutes of Health","keywords":"Lamprey; Biology; Vertebrate; Petromyzon; Genome; Evolutionary biology; Lineage (genetic); Phylum; Phylogenetics; Extant taxon; Genetics; Gene; Paleontology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002608133,0.0003982987,0.0003287682,0.0007295374,0.0004062031,0.000647939,0.0002215061,0.0005921261,0.001436816],"category_scores_gemma":[0.0004934281,0.0002517805,0.0004512758,0.000580491,0.0002217897,0.0004045719,0.0004296583,0.0008788807,0.0009803496],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006344722,"about_ca_system_score_gemma":0.0007021959,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006655807,"about_ca_topic_score_gemma":0.01352498,"domain_scores_codex":[0.9998822,0.000007775346,0.000008677152,0.00004386906,0.00003939792,0.00001792924],"domain_scores_gemma":[0.9996418,0.00004734585,0.0000621455,0.00003511114,0.0001402391,0.0000732895],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003313891,0.00004074816,0.01412507,0.0005517052,0.0001333793,0.0004612775,0.0004295124,0.0007334134,0.9030356,0.001231292,0.007406994,0.07151966],"study_design_scores_gemma":[0.00006563819,0.0003252598,0.3409255,0.0003442143,0.000618734,0.001579821,0.0009933454,0.005438147,0.2969082,0.004295664,0.3483775,0.0001279727],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9128245,0.02182372,0.02522658,0.00670595,0.000927021,0.0001093204,0.01976289,0.001790601,0.01082942],"genre_scores_gemma":[0.8689079,0.02231019,0.05498403,0.002783874,0.0004091285,0.00008662196,0.0322097,0.0005018176,0.01780676],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006655807,"threshold_uncertainty_score":0.01323414,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005219701527135528,"score_gpt":0.2011310715668169,"score_spread":0.1959113700396814,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}