{"id":"W2099502844","doi":"10.1080/10635150701258787","title":"Widespread Genealogical Nonmonophyly in Species of Pinus Subgenus Strobus","year":2007,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Pacific Northwest Research Station; Natural Resources Canada; Chiba University; Oregon State University; U.S. Department of Agriculture; U.S. Forest Service; National Science Foundation","keywords":"Biology; Monophyly; Paraphyly; Coalescent theory; Phylogenetic tree; Evolutionary biology; Nucleotide diversity; Subgenus; Zoology; Taxonomy (biology); Genetics; Allele; Clade; Haplotype; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003679672,0.0002093171,0.0002927604,0.001622854,0.0007123639,0.0005132816,0.0002444182,0.0002780018,0.0007575355],"category_scores_gemma":[0.0009358065,0.0002216236,0.0001213313,0.000826623,0.0008755032,0.0005100374,0.0005778325,0.0002089913,0.0001919762],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000301788,"about_ca_system_score_gemma":0.0001828527,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001075215,"about_ca_topic_score_gemma":0.003216591,"domain_scores_codex":[0.9996295,0.0001132025,0.00003101111,0.0001296297,0.00005717916,0.00003943708],"domain_scores_gemma":[0.9992724,0.000207594,0.00030076,0.00006097928,0.00005640286,0.0001019119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003633245,0.00004866423,0.8120603,0.0002261968,0.0001962482,0.0005231769,0.003912203,0.0003339748,0.1602789,0.0007758101,0.0001377333,0.0211434],"study_design_scores_gemma":[0.000008203465,0.00006782661,0.9964707,0.00001136545,0.00002647674,0.0006368753,0.0006146927,0.0003478442,0.0005883178,0.000396809,0.000818786,0.00001205984],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991882,0.0002914604,0.000193059,0.0000110825,0.000001375155,0.000003854615,0.00004949397,0.000008378578,0.0002529561],"genre_scores_gemma":[0.9994209,0.00009881869,0.0002565832,0.00001461632,0.000002880746,0.000007155065,0.000132463,0.00000409227,0.00006252324],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001622854,"threshold_uncertainty_score":0.00253427,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01980057993458255,"score_gpt":0.2520621957852728,"score_spread":0.2322616158506903,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}