{"id":"W2099508466","doi":"10.1083/jcb.200710009","title":"Genome-wide analysis of signaling networks regulating fatty acid–induced gene expression and organelle biogenesis","year":2008,"lang":"en","type":"article","venue":"The Journal of Cell Biology","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Center for Research Resources; National Institute of General Medical Sciences; U.S. Public Health Service","keywords":"Biology; Peroxisome; Biogenesis; Organelle biogenesis; Cell biology; Signal transduction; Phosphorylation; Cell signaling; Organelle; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002141157,0.0002168252,0.0002799127,0.0005650411,0.0001825768,0.0002893222,0.0001290657,0.0001979291,0.0006457575],"category_scores_gemma":[0.0001637435,0.000124065,0.0002467955,0.0005487661,0.000155532,0.00008946606,0.0002025987,0.0003148255,0.0001124659],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001268296,"about_ca_system_score_gemma":0.0001766809,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007869502,"about_ca_topic_score_gemma":0.001631705,"domain_scores_codex":[0.9998634,0.00001879049,0.000005723397,0.00006180361,0.0000251334,0.00002509889],"domain_scores_gemma":[0.9998296,0.00005486153,0.0000539384,0.0000116865,0.00001475656,0.00003500586],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006358277,0.00006150988,0.03824119,0.00009636243,0.0002340541,0.0002227672,0.0000544884,0.000483314,0.9520228,0.0001534418,0.0001506826,0.007643576],"study_design_scores_gemma":[0.00004087961,0.0002899447,0.9323357,0.00001047905,0.0003914106,0.001048176,0.0001018663,0.001863018,0.061207,0.000232181,0.002464208,0.00001505138],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996365,0.0008683787,0.001021033,0.00005115042,0.000004004905,0.00000858796,0.001269254,0.00002651231,0.0003861707],"genre_scores_gemma":[0.9931417,0.0005313724,0.000929655,0.00005537215,0.000005779817,0.00001915878,0.004756066,0.00001130751,0.0005495331],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007869502,"threshold_uncertainty_score":0.002160251,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01350491798729304,"score_gpt":0.2257746378708944,"score_spread":0.2122697198836014,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}