{"id":"W2099530092","doi":"10.1101/gr.106666.110","title":"Genomic signatures of germline gene expression","year":2010,"lang":"en","type":"article","venue":"Genome Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Howard Hughes Medical Institute","keywords":"Biology; Germline; Genetics; Transposable element; Gene; Germline mutation; Gene expression; Allele; Point mutation; Genome; Transcription (linguistics); Mutant; Mutation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005375665,0.0000671044,0.000102918,0.00002657484,0.000216291,0.0000259428,0.0003506241,0.0001075368,0.002566196],"category_scores_gemma":[0.0000737995,0.00002504944,0.00005627479,0.0003335547,0.0001015356,0.00002805277,0.0001887319,0.0003253886,0.00009379816],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008943888,"about_ca_system_score_gemma":0.00002119224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001062212,"about_ca_topic_score_gemma":0.0002425315,"domain_scores_codex":[0.9989167,0.00007988443,0.0001581919,0.0002169249,0.0003370468,0.0002911795],"domain_scores_gemma":[0.9993939,0.000198143,0.00002449018,0.00009781522,0.0001785457,0.0001070619],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001081617,0.00006032817,0.00165196,0.00000335686,0.00000344807,0.000001173848,0.00005340481,0.000008059863,0.9931363,0.0002037367,0.00006718055,0.004800233],"study_design_scores_gemma":[0.0001013282,0.0001611042,0.4646611,0.000004296154,0.000002253055,0.000004415903,0.00005265456,0.00002936325,0.5021705,0.00189967,0.03081512,0.00009820327],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974753,0.0003109446,0.00000237464,0.0005934955,0.00007591781,0.0001669269,0.00006251173,0.0000165422,0.001295952],"genre_scores_gemma":[0.9981685,0.00005606044,0.0007733633,0.00001492633,0.000487246,0.00001478901,0.0000575754,8.762265e-7,0.0004266338],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4909658,"threshold_uncertainty_score":0.9983456,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04610863886768088,"score_gpt":0.305605002791693,"score_spread":0.2594963639240121,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}