{"id":"W2099648721","doi":"10.1128/jb.00141-08","title":"An Ortholog of OxyR in <i>Legionella pneumophila</i> Is Expressed Postexponentially and Negatively Regulates the Alkyl Hydroperoxide Reductase ( <i>ahpC2D</i> ) Operon","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Queen Elizabeth II Health Sciences Centre","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Operon; Biology; Promoter; Repressor; Escherichia coli; Mutant; Molecular biology; Legionella pneumophila; Regulon; Biochemistry; Gene; Transcription factor; Gene expression; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008924239,0.0004609351,0.0002027193,0.000200081,0.0001323157,0.0003026521,0.0001825909,0.0003055088,0.0005241153],"category_scores_gemma":[0.0001490377,0.0001773314,0.000271369,0.0001523004,0.0001914253,0.000168421,0.0002125659,0.0003815155,0.0005217895],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000426484,"about_ca_system_score_gemma":0.0001690056,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009793236,"about_ca_topic_score_gemma":0.001245946,"domain_scores_codex":[0.9998611,0.00001588656,0.00001093926,0.00004142109,0.00004344902,0.00002713109],"domain_scores_gemma":[0.9998131,0.00002503407,0.00007966546,0.00002104197,0.0000234317,0.00003770576],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002050819,0.000004350468,0.0002671473,0.0000090491,0.000001136613,0.00002590178,0.000006793285,0.000008182474,0.9993939,0.00001308919,0.00001029323,0.0002395663],"study_design_scores_gemma":[0.000008017366,0.000120939,0.02634554,0.000005369029,0.00001056157,0.0005590212,0.0000613509,0.0007432687,0.9699948,0.00003424756,0.002109389,0.000007529673],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951474,0.0004910054,0.00303681,0.00007952315,0.00001710748,0.00001634915,0.0005668294,0.0001452052,0.000499847],"genre_scores_gemma":[0.9901508,0.0003085053,0.004937322,0.00009303751,0.00001259203,0.00002046714,0.002025199,0.00007351259,0.002378507],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009793236,"threshold_uncertainty_score":0.003094375,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0154901765957874,"score_gpt":0.256087864917995,"score_spread":0.2405976883222076,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}