{"id":"W2099648721","doi":"10.1128/jb.00141-08","title":"An Ortholog of OxyR in <i>Legionella pneumophila</i> Is Expressed Postexponentially and Negatively Regulates the Alkyl Hydroperoxide Reductase ( <i>ahpC2D</i> ) Operon","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Queen Elizabeth II Health Sciences Centre","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Operon; Biology; Promoter; Repressor; Escherichia coli; Mutant; Molecular biology; Legionella pneumophila; Regulon; Biochemistry; Gene; Transcription factor; Gene expression; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004720262,0.0001728278,0.0003707532,0.0001102007,0.00009649325,0.00001447263,0.0004028204,0.0001946796,0.000009581817],"category_scores_gemma":[0.00007728321,0.0001157715,0.0001064357,0.0001085615,0.0006379521,0.00002605802,0.000139225,0.0002672289,0.000001328071],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001181024,"about_ca_system_score_gemma":0.0001788837,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007642386,"about_ca_topic_score_gemma":0.00002158317,"domain_scores_codex":[0.9983734,0.0003540253,0.0005803761,0.0002671333,0.0001522019,0.0002728942],"domain_scores_gemma":[0.9989505,0.0000435075,0.0003680658,0.0003261747,0.0001955328,0.000116152],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006067015,0.0001215333,0.0119795,0.00001194428,0.00004988288,0.00009877587,0.0004818203,0.00004449896,0.985692,0.000007959486,0.0006763423,0.0002290858],"study_design_scores_gemma":[0.00139347,0.001840036,0.1027259,0.00004049639,0.00002015488,0.001809076,0.0002771676,0.00002476353,0.8886509,0.00008623505,0.002954337,0.000177512],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968696,0.000991415,0.00001239003,0.001782648,0.0001045204,0.0001303842,0.0000165253,0.000002141852,0.00009032542],"genre_scores_gemma":[0.9964862,0.00249767,0.0002670528,0.000442513,0.0001846959,0.000003409305,0.00001641409,0.00001934161,0.00008263431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09704108,"threshold_uncertainty_score":0.4721025,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0154901765957874,"score_gpt":0.256087864917995,"score_spread":0.2405976883222076,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}