{"id":"W2099709378","doi":"10.1128/jb.00536-10","title":"Massive Gene Duplication Event among Clinical Isolates of the <i>Mycobacterium tuberculosis</i> W/Beijing Family","year":2010,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Gene duplication; Biology; Genetics; Mycobacterium tuberculosis; Gene; Lineage (genetic); Genome; Tandem exon duplication; Phenotype; Gene family; Homologous recombination; Segmental duplication; Tuberculosis; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002014527,0.000166565,0.000879001,0.0001439386,0.00006768215,0.000008736485,0.0003421067,0.0003980817,0.0001124944],"category_scores_gemma":[0.002765042,0.00009834436,0.0005772866,0.0001596969,0.0005372383,0.0001203709,0.0001463836,0.00143343,0.00001421108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004658496,"about_ca_system_score_gemma":0.0002668511,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003987127,"about_ca_topic_score_gemma":0.00002348225,"domain_scores_codex":[0.9971218,0.0005651559,0.001541686,0.0002189315,0.0001852284,0.0003672002],"domain_scores_gemma":[0.9967822,0.0007705582,0.001124157,0.0004839091,0.0005634608,0.0002756826],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00028157,0.0001146119,0.44164,0.00002032788,0.0001782537,0.000009187818,0.0000286551,0.000005343384,0.5547385,0.00003329504,0.001036486,0.001913751],"study_design_scores_gemma":[0.0009733529,0.0008945354,0.9831952,0.00006968091,0.000145598,0.0006783961,0.00003772947,0.0001683868,0.009132194,0.0001612025,0.004461238,0.00008241214],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888223,0.0001819667,0.000120009,0.008837043,0.001595928,0.0002302627,0.000009027693,0.000007738661,0.0001956789],"genre_scores_gemma":[0.9957137,0.0007779351,0.001093821,0.00134472,0.0009881008,0.000006750469,0.000006284611,0.00001919036,0.00004957247],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5456063,"threshold_uncertainty_score":0.622762,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02430075980868561,"score_gpt":0.3390592544814726,"score_spread":0.314758494672787,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}