{"id":"W2099735862","doi":"10.1093/molbev/msr161","title":"Unity in Variety--The Pan-Genome of the Chlamydiae","year":2011,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":221,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control","funders":"Universität Wien; National Institute of Allergy and Infectious Diseases; Austrian Science Fund; World Health Organization","keywords":"Chlamydiae; Biology; Chlamydiales; Plasmid; Genome; Chlamydiaceae; Genetics; Gene; Virulence; Microbiology; Host adaptation; Chlamydia; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000159965,0.0004211648,0.0004219462,0.0008039384,0.0008049303,0.001253039,0.0003095944,0.0004329743,0.004453239],"category_scores_gemma":[0.0004095022,0.0001932028,0.0004195257,0.001419327,0.0004858822,0.0007552635,0.001445919,0.0008169038,0.00171139],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005850178,"about_ca_system_score_gemma":0.001030163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003054145,"about_ca_topic_score_gemma":0.004232598,"domain_scores_codex":[0.9997082,0.00002109001,0.00001693617,0.000115916,0.00006911943,0.00006865508],"domain_scores_gemma":[0.9997397,0.00002623255,0.00003856807,0.00006161931,0.00005981719,0.00007400793],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006086432,0.00009522215,0.07235423,0.0008319158,0.0001347332,0.001207942,0.002368367,0.0004575579,0.7647742,0.01357607,0.003381656,0.1402095],"study_design_scores_gemma":[0.00005192293,0.0003483104,0.3829121,0.0004185465,0.0002209918,0.005109754,0.003207894,0.0008614971,0.05341494,0.006399383,0.5469676,0.00008708308],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9114432,0.01319499,0.01317604,0.0009224503,0.0003789778,0.0001200924,0.0129712,0.0008714453,0.04692163],"genre_scores_gemma":[0.9485217,0.004896438,0.01142659,0.0006712196,0.00006383632,0.00008142232,0.01773309,0.0001571466,0.01644839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004453239,"threshold_uncertainty_score":0.01489758,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01658401722709122,"score_gpt":0.2622679839950314,"score_spread":0.2456839667679402,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}