{"id":"W2099735862","doi":"10.1093/molbev/msr161","title":"Unity in Variety--The Pan-Genome of the Chlamydiae","year":2011,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":221,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control","funders":"Universität Wien; National Institute of Allergy and Infectious Diseases; Austrian Science Fund; World Health Organization","keywords":"Chlamydiae; Biology; Chlamydiales; Plasmid; Genome; Chlamydiaceae; Genetics; Gene; Virulence; Microbiology; Host adaptation; Chlamydia; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005126682,0.0000722636,0.0001046723,0.00006962961,0.0001508301,0.000001472369,0.0001627141,0.0001846187,0.00006613164],"category_scores_gemma":[0.0002047629,0.00004275813,0.00004404785,0.000241918,0.0008084549,0.00002615573,0.0001112936,0.0003269052,0.00003026329],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000302279,"about_ca_system_score_gemma":0.00004565985,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001013225,"about_ca_topic_score_gemma":0.00009786283,"domain_scores_codex":[0.998857,0.0006226021,0.0001434026,0.0001807928,0.00001416391,0.0001820467],"domain_scores_gemma":[0.9995132,0.00004787722,0.00005414403,0.0003200419,0.00005861673,0.000006118942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005412719,0.00009315673,0.1754815,0.000004783794,0.00005179903,5.112223e-7,0.0002867247,0.000002973596,0.7980257,0.02546873,0.00001339445,0.0005166088],"study_design_scores_gemma":[0.0002251152,0.00009661364,0.9127873,0.000003603041,0.00001173551,0.0000320449,0.00007139792,0.000001328894,0.0762924,0.009585634,0.0008439066,0.00004896046],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994262,0.001945241,0.001612411,0.0002203427,0.0002067702,0.0002222951,0.000006697269,0.000009535222,0.00151467],"genre_scores_gemma":[0.9997017,0.00004133413,0.00002144948,0.00003163204,0.000006798469,0.00002004375,0.000009500845,0.000003929717,0.0001636289],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7373058,"threshold_uncertainty_score":0.2978786,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01658401722709122,"score_gpt":0.2622679839950314,"score_spread":0.2456839667679402,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}