{"id":"W2099799105","doi":"10.1128/aac.01516-07","title":"Molecular Characterization of<i>Enterococcus faecalis</i>N06-0364 with Low-Level Vancomycin Resistance Harboring a Novel<scp>d</scp>-Ala-<scp>d</scp>-Ser Gene Cluster,<i>vanL</i>","year":2008,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":135,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network; Public Health Agency of Canada","funders":"","keywords":"Enterococcus faecalis; Operon; Gene cluster; Enterococcus; Vancomycin; Gene; Microbiology; Biology; Molecular biology; Bacteria; Antibiotics; Genetics; Escherichia coli; Staphylococcus aureus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002040055,0.0008024555,0.001179288,0.0002689824,0.0003360993,0.00008745328,0.0003863879,0.0003534244,0.0000199918],"category_scores_gemma":[0.0000937431,0.0007294152,0.0003069817,0.0006715856,0.0005151363,0.0003467935,0.0001258776,0.0004355315,0.00001625454],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001294918,"about_ca_system_score_gemma":0.0002029536,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004615558,"about_ca_topic_score_gemma":0.00002922348,"domain_scores_codex":[0.9962837,0.00006797031,0.0009809625,0.001080315,0.0006181545,0.0009689237],"domain_scores_gemma":[0.9975779,0.0001355333,0.0007112149,0.0007976195,0.0004280146,0.0003496906],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004027101,0.0007588287,0.02346328,0.0005204204,0.0003759827,0.0002153061,0.001394808,0.00002449739,0.9594609,0.00002112009,0.01306287,0.0002993268],"study_design_scores_gemma":[0.008624446,0.0002685328,0.1071357,0.001148734,0.0001662903,0.0001995723,0.00009598265,0.00007966458,0.7968997,0.000008029285,0.0850853,0.0002879848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9816446,0.0001225537,0.01481351,0.0005730199,0.0002770768,0.001323598,0.0003447185,0.0001416233,0.0007592607],"genre_scores_gemma":[0.9761091,0.00234707,0.00675846,0.009756862,0.0002947135,0.00004077262,0.0002831944,0.0002508286,0.004158935],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1625611,"threshold_uncertainty_score":0.9995157,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01363560823402734,"score_gpt":0.2306670682952003,"score_spread":0.2170314600611729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}