{"id":"W2100363512","doi":"10.1093/nar/gkr485","title":"PHAST: A Fast Phage Search Tool","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":2099,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"Canadian Institutes of Health Research; Genome Alberta; Genome Canada","keywords":"Prophage; GenBank; Biology; Genome; Genetics; Reference genome; Computational biology; Bacteriophage; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002166601,0.002530179,0.002456365,0.002975367,0.001415123,0.002286434,0.002718612,0.001515467,0.05003312],"category_scores_gemma":[0.004245595,0.002192332,0.001768523,0.00248079,0.0003448809,0.001757209,0.002163005,0.002102891,0.04430338],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005770763,"about_ca_system_score_gemma":0.001508832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001654168,"about_ca_topic_score_gemma":0.00180842,"domain_scores_codex":[0.9988098,0.000239023,0.00009418172,0.0002619192,0.0004455553,0.0001494925],"domain_scores_gemma":[0.9987276,0.0006042509,0.00009691914,0.0001326705,0.0002970762,0.0001414303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003421656,0.0003477854,0.003825791,0.003123743,0.0004081854,0.0009753166,0.0003059,0.005172401,0.09278948,0.004523753,0.6331331,0.2519729],"study_design_scores_gemma":[0.001741509,0.0007447473,0.007157232,0.000605931,0.0002641634,0.002220292,0.0002221371,0.1212624,0.1537012,0.01384957,0.6975505,0.0006804536],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.01743345,0.003247306,0.4302905,0.0006447174,0.0007005529,0.001172655,0.111154,0.4223386,0.01301809],"genre_scores_gemma":[0.04650949,0.001968963,0.612565,0.000723172,0.0002045723,0.002420288,0.2695536,0.04274457,0.02331042],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.05003312,"threshold_uncertainty_score":0.1673775,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07767852593840542,"score_gpt":0.3349419860426489,"score_spread":0.2572634601042435,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}