{"id":"W2100385616","doi":"10.1158/1055-9965.epi-08-0875","title":"CpG Island Tumor Suppressor Promoter Methylation in Non-BRCA-Associated Early Mammary Carcinogenesis","year":2009,"lang":"en","type":"article","venue":"Cancer Epidemiology Biomarkers & Prevention","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"Immunovaccine (Canada)","funders":"National Cancer Institute","keywords":"CpG site; Suppressor; Carcinogenesis; Methylation; DNA methylation; Cancer research; Biology; Tumor suppressor gene; Cancer; Genetics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001800025,0.0002723289,0.0004165312,0.0001704306,0.00008768126,0.00001557599,0.0002247925,0.0004245933,0.00003518423],"category_scores_gemma":[0.0004338596,0.000274509,0.0002094642,0.0002335175,0.00006809952,0.00002311921,0.000060705,0.0001420419,0.00000577374],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001085663,"about_ca_system_score_gemma":0.0001038519,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002500545,"about_ca_topic_score_gemma":0.0006666649,"domain_scores_codex":[0.9971188,0.0008849055,0.0006966797,0.0006951084,0.0001105288,0.0004939452],"domain_scores_gemma":[0.998884,0.00008250795,0.0004024346,0.0004068784,0.0001180541,0.0001061381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002890983,0.000167524,0.3723347,0.00002435464,0.0002152754,0.000005896065,0.00007323476,0.0002600911,0.6031625,0.00006484304,0.001087032,0.02231544],"study_design_scores_gemma":[0.001198621,0.0005071107,0.8802404,0.00007267787,0.00006526441,0.000001573453,0.000008436488,0.0009575032,0.1071069,0.008765121,0.0007502671,0.0003261034],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.97215,0.008430904,0.01689861,0.001210842,0.0003537786,0.00062047,0.0000263126,0.00002306044,0.000286028],"genre_scores_gemma":[0.9964905,0.0007289923,0.001227193,0.0003302159,0.000169572,0.0001768745,0.0004892026,0.00002423129,0.0003632307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5079058,"threshold_uncertainty_score":0.9999707,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02453237871002979,"score_gpt":0.3232812240395403,"score_spread":0.2987488453295106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}