{"id":"W2100477704","doi":"10.3767/003158515x685382","title":"<i>Phytopythium</i>: molecular phylogeny and systematics","year":2014,"lang":"en","type":"article","venue":"Persoonia - Molecular Phylogeny and Evolution of Fungi","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":142,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Ohio State University; Genome Canada; Ontario Genomics; Ontario Genomics Institute","keywords":"Biology; Pythium; Clade; Phylogenetic tree; Botany; Sporangium; Phylogenetics; Molecular phylogenetics; Genus; Ribosomal DNA; Phytophthora; Subgenus; Cytochrome c oxidase subunit I; Mitochondrial DNA; Antheridium; Evolutionary biology; Zoology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003429587,0.0002245863,0.0003518004,0.00002965349,0.0001895772,0.00003873603,0.0001610825,0.0001649842,0.00001777798],"category_scores_gemma":[0.00005269472,0.0001102802,0.0001221384,0.0002205753,0.0001493471,0.00005147412,0.00007590353,0.0001106539,0.000007412099],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000227323,"about_ca_system_score_gemma":0.0000108879,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005171327,"about_ca_topic_score_gemma":0.0000340515,"domain_scores_codex":[0.998553,0.00017195,0.0003034013,0.0003893633,0.0002668592,0.0003154694],"domain_scores_gemma":[0.9993747,0.00009201077,0.0001665942,0.0001173835,0.00009319928,0.0001561519],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002272895,0.00004112403,0.002216851,0.0001530837,0.00003625857,0.00001091407,0.00004356994,0.00001325735,0.9846084,0.008671568,0.00005133793,0.00413087],"study_design_scores_gemma":[0.00224453,0.00227731,0.7020651,0.001107256,0.000713667,0.0005198031,0.001976067,0.01498326,0.2362401,0.01921443,0.01570152,0.002956958],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9838156,0.01334676,0.0009877237,0.000168282,0.00008577943,0.0002204379,0.0001087653,0.00003449068,0.001232143],"genre_scores_gemma":[0.9986125,0.0002651255,0.0007464521,0.0001774357,0.00007306426,0.00001179909,0.00002233285,0.000002909151,0.00008833835],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7483683,"threshold_uncertainty_score":0.4497096,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005286684017619952,"score_gpt":0.1749746572729935,"score_spread":0.1696879732553735,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}