{"id":"W2100540576","doi":"10.1186/s12977-014-0064-1","title":"Early immune adaptation in HIV-1 revealed by population-level approaches","year":2014,"lang":"en","type":"article","venue":"Retrovirology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; University of British Columbia; AIDS Vancouver; Simon Fraser University","funders":"National Institute on Drug Abuse; Canadian Institutes of Health Research; National Cancer Institute; U.S. Department of Health and Human Services; National Institutes of Health; Michael Smith Health Research BC; Frederick National Laboratory for Cancer Research; Wellcome Trust","keywords":"Human leukocyte antigen; Population; Immunology; Biology; Immune system; Human immunodeficiency virus (HIV); Genotype; CD8; Genetics; Medicine; Virology; Antigen; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003342718,0.0002012869,0.0004201761,0.0008127375,0.0003350105,0.001089036,0.0004941591,0.0004475701,0.001025206],"category_scores_gemma":[0.005874326,0.0001896584,0.0005806847,0.0009645518,0.0004788196,0.0005015176,0.0009307395,0.0008284331,0.0001914559],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003196439,"about_ca_system_score_gemma":0.0003531807,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009788385,"about_ca_topic_score_gemma":0.001433413,"domain_scores_codex":[0.9987482,0.0004960893,0.00005340471,0.0004970056,0.0001045123,0.0001007552],"domain_scores_gemma":[0.9968421,0.001700259,0.0005238083,0.0006459552,0.0001554767,0.0001324327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005664853,0.0001353262,0.9374376,0.0002243149,0.001039531,0.0001553649,0.0004462388,0.006892864,0.02903867,0.001429879,0.0006314414,0.02200239],"study_design_scores_gemma":[0.0000292985,0.0003755684,0.9653081,0.00003446717,0.0003422382,0.0003069996,0.000298025,0.02331224,0.003720029,0.003455589,0.002787163,0.00003030942],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860385,0.0006824888,0.009825497,0.00009160898,0.000008828836,0.00004525559,0.002517376,0.00006883381,0.0007215572],"genre_scores_gemma":[0.9925626,0.0001538513,0.00425678,0.00006955791,0.00001279329,0.00007592479,0.002709649,0.00001088376,0.0001479316],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003342718,"threshold_uncertainty_score":0.0176782,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03556698837309982,"score_gpt":0.2357205393838264,"score_spread":0.2001535510107266,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}