{"id":"W2100765607","doi":"10.1186/1752-0509-3-15","title":"Genome-scale constraint-based modeling of Geobacter metallireducens","year":2009,"lang":"en","type":"article","venue":"BMC Systems Biology","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Office of Science; U.S. Department of Energy","keywords":"Chemistry; Geobacter sulfurreducens; Environmental chemistry; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002409521,0.0000970309,0.0001930612,0.00002791766,0.00003238483,0.000007300606,0.0001278998,0.0001110086,0.0003401207],"category_scores_gemma":[0.00001021536,0.00007613737,0.00006431798,0.00007919848,0.00009334778,0.00003141567,0.00002033697,0.00004319993,0.0001158614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004749768,"about_ca_system_score_gemma":0.00001656026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003175882,"about_ca_topic_score_gemma":0.00006847169,"domain_scores_codex":[0.9991497,0.00008151573,0.0002893782,0.0002169951,0.00006614075,0.0001962421],"domain_scores_gemma":[0.9996516,0.00001927876,0.0001076873,0.0001587344,0.00001189774,0.00005081245],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00001192343,0.00004086573,0.01130748,0.00001567185,0.000003743367,3.19904e-7,0.0000399616,0.0162683,0.9719533,0.00006221885,0.00002567156,0.0002705355],"study_design_scores_gemma":[0.00436177,0.00200765,0.1453448,0.0001563727,0.0002247468,0.00008584296,0.0008199984,0.698268,0.1159516,0.0009283353,0.02960134,0.002249543],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9824154,0.0001407403,0.01320044,0.00004367314,0.000217774,0.0002334503,0.00002509541,0.0000223974,0.003700998],"genre_scores_gemma":[0.9984125,0.000008093538,0.001305609,0.00007038812,0.00007052668,0.000003277758,0.00004666775,0.000004215808,0.00007866165],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8560017,"threshold_uncertainty_score":0.3724083,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01948511541999249,"score_gpt":0.2229442515073792,"score_spread":0.2034591360873867,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}