{"id":"W2101000074","doi":"10.1186/gb-2010-11-7-r73","title":"Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire","year":2010,"lang":"en","type":"article","venue":"Genome biology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":421,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; Agriculture and Agri-Food Canada","funders":"National Center for Research Resources; National Human Genome Research Institute; Natural Environment Research Council; Cooperative State Research, Education, and Extension Service; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture; Ministerie van Landbouw, Natuur en Voedselkwaliteit; European Commission; Deutsche Forschungsgemeinschaft; Sight Research UK; National Institutes of Health; National Institute of Food and Agriculture; Biotechnology and Biological Sciences Research Council; Crohn's and Colitis Foundation of Canada; National Science Foundation; Baden-Württemberg Stiftung; University of Utah","keywords":"Biology; Pathogenicity; Pythium ultimum; Effector; Genome; Repertoire; Genetics; Pathogen; Computational biology; Plant science; Whole genome sequencing; Evolutionary biology; Botany; Gene; Microbiology; Biological pest control; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001235143,0.0005848213,0.0003180651,0.0006012522,0.000350326,0.0003970276,0.0001917378,0.0004098864,0.002087742],"category_scores_gemma":[0.0003614326,0.0001795389,0.0003897837,0.0009490675,0.0001448259,0.0002462021,0.0003162891,0.0006786906,0.001136217],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002207869,"about_ca_system_score_gemma":0.0003763413,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001412256,"about_ca_topic_score_gemma":0.001487881,"domain_scores_codex":[0.9999019,0.000006448205,0.000005640241,0.00004331666,0.00002499885,0.00001772033],"domain_scores_gemma":[0.9998,0.00005103342,0.00004352375,0.00001927836,0.00003499237,0.00005113456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004808474,0.0000364107,0.005043194,0.0003256148,0.00002567679,0.0004409355,0.0001291783,0.0001752519,0.9844947,0.00006440219,0.000423828,0.008359917],"study_design_scores_gemma":[0.0001545542,0.0009714832,0.790201,0.0002580203,0.0004218395,0.00818625,0.0005834536,0.003839611,0.1412417,0.0007460549,0.05330101,0.00009506739],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9358757,0.002871922,0.00613314,0.0001855001,0.00006024238,0.00008348421,0.05201937,0.0003314488,0.002439291],"genre_scores_gemma":[0.7972675,0.002551612,0.02622313,0.0002386171,0.00006519169,0.0001697743,0.1693798,0.0002512526,0.003853051],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002087742,"threshold_uncertainty_score":0.006984174,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01328049978760601,"score_gpt":0.2034411503985576,"score_spread":0.1901606506109516,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}