{"id":"W2101000074","doi":"10.1186/gb-2010-11-7-r73","title":"Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire","year":2010,"lang":"en","type":"article","venue":"Genome biology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":421,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University; Agriculture and Agri-Food Canada","funders":"National Center for Research Resources; National Human Genome Research Institute; Natural Environment Research Council; Cooperative State Research, Education, and Extension Service; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture; Ministerie van Landbouw, Natuur en Voedselkwaliteit; European Commission; Deutsche Forschungsgemeinschaft; Sight Research UK; National Institutes of Health; National Institute of Food and Agriculture; Biotechnology and Biological Sciences Research Council; Crohn's and Colitis Foundation of Canada; National Science Foundation; Baden-Württemberg Stiftung; University of Utah","keywords":"Biology; Pathogenicity; Pythium ultimum; Effector; Genome; Repertoire; Genetics; Pathogen; Computational biology; Plant science; Whole genome sequencing; Evolutionary biology; Botany; Gene; Microbiology; Biological pest control; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004569455,0.0002195739,0.0003486599,0.00001492077,0.0003098583,0.00001998889,0.0004966337,0.0002823823,0.0001367322],"category_scores_gemma":[0.00007260442,0.00007261987,0.0001284038,0.0001990374,0.0002955088,0.00003707353,0.0001786776,0.0002814618,0.00001540773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001634546,"about_ca_system_score_gemma":0.00002244554,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009206318,"about_ca_topic_score_gemma":0.0003638413,"domain_scores_codex":[0.9984539,0.0002059323,0.0003100086,0.0004854977,0.0001244848,0.0004201922],"domain_scores_gemma":[0.9992471,0.000154281,0.0002220715,0.000189094,0.00006421584,0.0001232488],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004128702,0.00002450995,0.005992511,0.00001487945,0.00001331783,0.00001512755,0.00001882139,7.738313e-7,0.9918139,0.001151684,0.000005719123,0.0009074757],"study_design_scores_gemma":[0.0003091654,0.0006216666,0.8998151,0.00003027691,0.00005078075,0.0005653838,0.00003975895,0.00003322542,0.02555073,0.003885661,0.06853955,0.0005586814],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927713,0.0005299351,0.00001081853,0.0003713926,0.0004788449,0.0003734594,0.005353694,0.00003472138,0.00007582005],"genre_scores_gemma":[0.9984585,0.000173288,0.0004530007,0.000179442,0.0002314357,0.00002434987,0.0002765462,0.000002151858,0.0002012738],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9662632,"threshold_uncertainty_score":0.2961352,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01328049978760601,"score_gpt":0.2034411503985576,"score_spread":0.1901606506109516,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}