{"id":"W2101035812","doi":"10.1089/aid.2007.0200","title":"Full-Length HIV Type 1 Proviral Sequencing of 10 Highly Exposed Women from Nairobi, Kenya Reveals a High Proportion of Intersubtype Recombinants","year":2008,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Biology; Clade; Virology; Genotyping; Recombination; Phylogenetic tree; Recombinant DNA; Genetics; Lentivirus; Sequence analysis; Virus; Gene; Genotype; Viral disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000160712,0.0003608475,0.000232987,0.000499501,0.00101925,0.0003850752,0.0001778326,0.0004563548,0.002426574],"category_scores_gemma":[0.0007351756,0.0003291401,0.00008225223,0.0003387062,0.0003534352,0.0001608896,0.0002894138,0.0002678769,0.0004109304],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002326325,"about_ca_system_score_gemma":0.0002104885,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01302356,"about_ca_topic_score_gemma":0.01463422,"domain_scores_codex":[0.9998412,0.00003851857,0.00001238135,0.00004036268,0.00003028739,0.00003721858],"domain_scores_gemma":[0.9998871,0.00003614057,0.00001981999,0.00001051761,0.00001855922,0.00002778207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004719377,0.0002167718,0.9272946,0.00009120756,0.00003986152,0.003142624,0.006287167,0.0000513751,0.04811536,0.00005531211,0.0003319847,0.0139019],"study_design_scores_gemma":[0.00001490086,0.0003730054,0.9910382,0.00001759049,0.00002393208,0.004039288,0.001625144,0.00009153286,0.001490114,0.0000222813,0.001257194,0.000006850982],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999151,0.0001332621,0.00009005071,0.00002076251,0.000001880035,0.00001749544,0.000115215,0.000001858345,0.0004684793],"genre_scores_gemma":[0.9985852,0.0001479746,0.0001730324,0.00005941389,0.000005622102,0.00001642082,0.0002251381,0.000002518444,0.0007847119],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01302356,"threshold_uncertainty_score":0.02589548,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07738735262159918,"score_gpt":0.3164510593982117,"score_spread":0.2390637067766125,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}