{"id":"W2101414469","doi":"10.1111/j.1529-8817.2004.03129.x","title":"EARLY EVOLUTIONARY HISTORY OF DINOFLAGELLATES AND APICOMPLEXANS (ALVEOLATA) AS INFERRED FROM HSP90 AND ACTIN PHYLOGENIES<sup>1</sup>","year":2004,"lang":"en","type":"article","venue":"Journal of Phycology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"","keywords":"Biology; Protist; Lineage (genetic); Phylogenetic tree; Evolutionary biology; Coalescent theory; Dinoflagellate; Phylogenetics; Apicomplexa; Genetics; Gene; Ecology; Plasmodium falciparum","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001141305,0.0001261773,0.0002665788,0.00008604328,0.00004968201,0.00000583525,0.0001606646,0.0001983133,0.0001094574],"category_scores_gemma":[0.00007536726,0.0001248705,0.00009116098,0.00003393235,0.0003060057,0.00001389655,0.0001445961,0.0001678402,0.00000275655],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006235096,"about_ca_system_score_gemma":0.0002120628,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001827677,"about_ca_topic_score_gemma":0.00001181371,"domain_scores_codex":[0.9992247,0.00007799549,0.0002637814,0.0001743207,0.0001029165,0.0001562583],"domain_scores_gemma":[0.9993421,0.00004404315,0.000266523,0.0001280078,0.0001150458,0.0001042381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008016757,0.0001795134,0.08246164,0.00003038038,0.0003732154,0.00006229158,0.001091378,0.0002261004,0.9114096,0.0003108129,0.001994065,0.00105935],"study_design_scores_gemma":[0.005765758,0.004582888,0.8697122,0.00006074941,0.0002657068,0.0007691701,0.0005071239,0.00003699512,0.06510483,0.01230975,0.0404228,0.0004620627],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926303,0.006191817,0.0001331825,0.0001565335,0.0001512337,0.00007884482,0.00004039676,0.000002548438,0.0006151322],"genre_scores_gemma":[0.9979363,0.0004840441,0.001040749,0.0001746965,0.0002015106,9.55372e-7,0.00001634724,0.000008643065,0.0001367685],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8463047,"threshold_uncertainty_score":0.5092072,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01080430848663711,"score_gpt":0.2135818242217402,"score_spread":0.2027775157351031,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}