{"id":"W2101524130","doi":"10.1261/rna.1601409","title":"The RNA structure alignment ontology","year":2009,"lang":"en","type":"letter","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Science Foundation","keywords":"Biology; Sequence (biology); RNA; Computational biology; Alignment-free sequence analysis; Sequence alignment; Nucleic acid structure; Nucleic acid secondary structure; Ontology; Genetics; Peptide sequence; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001234083,0.0003055849,0.0002318682,0.00002306451,0.0001837378,0.00005471742,0.0005837576,0.00114106,0.00008993554],"category_scores_gemma":[0.00004128289,0.000206053,0.0001718661,0.0000293994,0.00006748992,9.665483e-7,0.00008389528,0.0004686987,0.00003323024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002270015,"about_ca_system_score_gemma":0.00007096601,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001264559,"about_ca_topic_score_gemma":0.00002189364,"domain_scores_codex":[0.9985051,0.0001637948,0.000225706,0.000442503,0.0002254507,0.0004374202],"domain_scores_gemma":[0.9989447,0.00002221613,0.0001659215,0.0007834283,0.00004082594,0.00004291135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001603749,0.000003265295,7.062353e-7,0.000009110888,0.00006874488,0.0000339461,0.000005415734,7.960753e-7,0.2856526,0.00005516828,0.6902307,0.02392348],"study_design_scores_gemma":[0.00006886981,0.0001212557,0.000007034489,0.00001152147,0.00002513399,0.00002691276,0.000003198953,4.61291e-7,0.2888725,0.001789557,0.708885,0.0001886469],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.007961294,0.01259383,0.001007637,0.9573007,0.002723331,0.001023595,0.0001787732,0.00005159941,0.01715925],"genre_scores_gemma":[0.04061446,0.00167259,0.00097208,0.9081553,0.01308912,0.00007150177,0.000770111,0.0001159334,0.03453886],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.04914535,"threshold_uncertainty_score":0.8800901,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008006714413060372,"score_gpt":0.2248622594771921,"score_spread":0.2168555450641317,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}