{"id":"W2101524130","doi":"10.1261/rna.1601409","title":"The RNA structure alignment ontology","year":2009,"lang":"en","type":"letter","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Science Foundation","keywords":"Biology; Sequence (biology); RNA; Computational biology; Alignment-free sequence analysis; Sequence alignment; Nucleic acid structure; Nucleic acid secondary structure; Ontology; Genetics; Peptide sequence; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002463505,0.0006459216,0.0005444633,0.002534781,0.002871221,0.004757134,0.002323565,0.003080153,0.01008118],"category_scores_gemma":[0.005891798,0.0005141189,0.0008827733,0.003260695,0.002123012,0.007282904,0.003080858,0.004288644,0.008470017],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003525728,"about_ca_system_score_gemma":0.004729047,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004176352,"about_ca_topic_score_gemma":0.004195792,"domain_scores_codex":[0.9974987,0.000626205,0.0003120465,0.0003345463,0.001066626,0.0001618667],"domain_scores_gemma":[0.9965575,0.001414104,0.0004061338,0.0007027606,0.0006878659,0.000231718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.00003370292,0.00004800985,0.0003900634,0.0003337146,0.00001423876,0.0005041758,0.0004974786,0.001218341,0.004009724,0.7167571,0.1070795,0.1691139],"study_design_scores_gemma":[0.0000106922,0.000009518421,0.0002625959,0.0001281203,0.000007478023,0.00103432,0.000142083,0.003930242,0.00100068,0.1088125,0.8846382,0.00002370852],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.004734761,0.006179257,0.7238423,0.04165971,0.002859821,0.0006335638,0.00769546,0.007937729,0.2044574],"genre_scores_gemma":[0.07081044,0.01196522,0.807387,0.01824989,0.002169288,0.001318225,0.02425323,0.001790754,0.06205593],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01008118,"threshold_uncertainty_score":0.0337249,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008006714413060372,"score_gpt":0.2248622594771921,"score_spread":0.2168555450641317,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}