{"id":"W2101544061","doi":"10.1186/1471-2164-13-314","title":"Transposable elements in phytopathogenic Verticillium spp.: insights into genome evolution and inter- and intra-specific diversification","year":2012,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":80,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture; National Science Foundation","keywords":"Biology; Retrotransposon; Genetics; Genome; Transposable element; Verticillium; Mobile genetic elements; ORFS; Gene; Botany; Open reading frame","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001141126,0.00009233606,0.00009428321,0.00001868646,0.0001283483,0.00002763637,0.00007581119,0.00005869539,0.00005486203],"category_scores_gemma":[0.000007794918,0.00004848143,0.00002263195,0.0001369679,0.00003955836,0.0001292459,0.00004386096,0.00005176792,0.00002088461],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008649336,"about_ca_system_score_gemma":0.000006272393,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006348836,"about_ca_topic_score_gemma":0.001772542,"domain_scores_codex":[0.9993357,0.00004234116,0.0001807898,0.0001890843,0.00006141471,0.0001906698],"domain_scores_gemma":[0.9997752,0.00003440357,0.00004275921,0.00004339489,0.0000183635,0.0000858488],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002377086,0.0001133131,0.2899343,0.000008782331,0.000005220217,2.506533e-7,0.001560261,0.00001471497,0.7016252,0.000578546,0.000004873566,0.006130831],"study_design_scores_gemma":[0.0002328907,0.00007430305,0.9877862,0.000006850911,0.0000112957,0.000002308733,0.0004459888,0.0003602928,0.001259883,0.001276186,0.008411362,0.0001324816],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972146,0.00217006,0.00013959,0.00009595876,0.00009775721,0.0001843236,0.00001490144,0.00001289128,0.00006995216],"genre_scores_gemma":[0.998764,0.0004600097,0.0005310632,0.00002519721,0.0001246501,0.00001123699,0.00005909519,9.970606e-7,0.00002378189],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7003652,"threshold_uncertainty_score":0.1977015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02230281176401249,"score_gpt":0.1987042402636782,"score_spread":0.1764014284996657,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}