{"id":"W2101564623","doi":"10.1093/nar/gkg307","title":"Formation of the P1.1 pseudoknot is critical for both the cleavage activity and substrate specificity of an antigenomic trans-acting hepatitis delta ribozyme","year":2003,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Hepatitis C virus research","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Health Canada","keywords":"Pseudoknot; Ribozyme; Hairpin ribozyme; Mammalian CPEB3 ribozyme; Biology; VS ribozyme; Cleavage (geology); Base pair; Stem-loop; Stereochemistry; Nucleotide; RNA; Genetics; Gene; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001593369,0.0003014708,0.0002900143,0.0001511749,0.0001243549,0.0002740044,0.0001512058,0.0002506447,0.0004840177],"category_scores_gemma":[0.0004143128,0.0001677157,0.0001713847,0.0000973667,0.0002251498,0.0001615572,0.0001644929,0.0004134574,0.0002557837],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001632426,"about_ca_system_score_gemma":0.0001827027,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001732105,"about_ca_topic_score_gemma":0.000212304,"domain_scores_codex":[0.9997576,0.00006698951,0.00002873661,0.00004963612,0.00006193998,0.00003513799],"domain_scores_gemma":[0.9996004,0.0001176147,0.0001483404,0.00003395206,0.00002863695,0.00007114144],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008477425,0.00001526751,0.0002422539,0.0000120871,0.000002603877,0.00005424775,0.000007643497,0.0001308867,0.9988126,0.00004671831,0.000003214491,0.0005876782],"study_design_scores_gemma":[0.000008838129,0.0002663982,0.003418063,0.000003025735,0.00001191614,0.0003986886,0.00001151972,0.0009736594,0.9945307,0.0000436614,0.0003283458,0.000005093902],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984102,0.0001659257,0.001140927,0.00001202707,0.000004382718,0.000008476236,0.00003712156,0.00001445484,0.0002063939],"genre_scores_gemma":[0.9984382,0.00008709536,0.001076957,0.00001003005,0.000003177441,0.000009774111,0.0001361928,0.00001149813,0.000227002],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004840177,"threshold_uncertainty_score":0.00161922,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1071627646526668,"score_gpt":0.3939030518288077,"score_spread":0.2867402871761409,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}