{"id":"W2101613431","doi":"10.1261/rna.142007","title":"Core requirements of the adenine riboswitch aptamer for ligand binding","year":2007,"lang":"en","type":"article","venue":"RNA","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Riboswitch; Aptamer; Biology; Computational biology; Genetics; RNA; Gene; Non-coding RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003545641,0.0002755046,0.0004798069,0.0001933916,0.0002322976,0.0005418631,0.0002524027,0.0004201572,0.001427768],"category_scores_gemma":[0.0008801076,0.0002232894,0.0001631215,0.0001160013,0.0002662364,0.0003915163,0.0003649943,0.0004517111,0.0005722108],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002806393,"about_ca_system_score_gemma":0.000398507,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003195367,"about_ca_topic_score_gemma":0.0009217722,"domain_scores_codex":[0.9996928,0.0000520744,0.00002459389,0.00005738737,0.0001140838,0.00005918341],"domain_scores_gemma":[0.9993042,0.0003022524,0.0001153758,0.0000469708,0.00008388062,0.000147322],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005528532,0.00001358484,0.0002471594,0.00002015625,0.000001271077,0.00004532842,0.00001048749,0.0004420888,0.9978634,0.000362929,0.00001214023,0.0009261365],"study_design_scores_gemma":[0.0000175525,0.0002187426,0.003760433,0.000006810182,0.000009673674,0.0003045223,0.00003238241,0.00867291,0.9851945,0.000947374,0.0008249977,0.00001026564],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9877053,0.0003316173,0.009448295,0.0000579876,0.000008457588,0.00002185437,0.00006745026,0.00008916936,0.002269869],"genre_scores_gemma":[0.9971371,0.00006470783,0.002384238,0.00002122497,0.000003655374,0.00001126785,0.00009747779,0.00001577901,0.0002646208],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001427768,"threshold_uncertainty_score":0.004776359,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04870394076552133,"score_gpt":0.3049278652236925,"score_spread":0.2562239244581712,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}