{"id":"W2101699731","doi":"10.1139/gen-2012-0162","title":"A novel application of ecological analyses to assess transposable element distributions in the genome of the domestic cow, <i>Bos taurus</i>","year":2013,"lang":"en","type":"article","venue":"Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Genome; Transposable element; Transect; Gene density; Evolutionary biology; Genome size; Genome evolution; Genetics; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005699035,0.000299431,0.0002540166,0.001982654,0.0004952078,0.0004101553,0.0002728452,0.0001876192,0.0004481048],"category_scores_gemma":[0.001597461,0.0001900321,0.0003808333,0.001009375,0.0002408598,0.0002448231,0.0004425107,0.0003110879,0.00008507575],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002626507,"about_ca_system_score_gemma":0.0003384988,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004009985,"about_ca_topic_score_gemma":0.007561588,"domain_scores_codex":[0.999627,0.0001310582,0.00001742871,0.0001440553,0.00005129811,0.00002923224],"domain_scores_gemma":[0.9990574,0.000425402,0.0001841099,0.0001078114,0.000133057,0.00009233302],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003803928,0.0002609134,0.3239548,0.0001533191,0.0003235617,0.0002350747,0.0004677939,0.006035415,0.6046858,0.001466351,0.0001757228,0.06186087],"study_design_scores_gemma":[0.00001940992,0.0003653796,0.8969384,0.000009070643,0.0001244239,0.0009779095,0.000400939,0.0533018,0.04492842,0.001386437,0.001492049,0.00005567273],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9619446,0.0001227293,0.03653284,0.00004119204,0.000003838581,0.00002482381,0.0005113764,0.00007041428,0.0007482134],"genre_scores_gemma":[0.905887,0.00006077592,0.09320389,0.00002998947,0.000007159457,0.00003630893,0.0004683183,0.00002326887,0.0002834031],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004009985,"threshold_uncertainty_score":0.007973313,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04106682445390859,"score_gpt":0.2776945105646811,"score_spread":0.2366276861107725,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}