{"id":"W2101754326","doi":"10.1101/gad.251694.114","title":"Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization","year":2014,"lang":"en","type":"article","venue":"Genes & Development","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":250,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Institute of Genetics; Medical Research Council; Canadian Institutes of Health Research","keywords":"Chromosome conformation capture; Biology; Chromatin; Genome; Fluorescence in situ hybridization; Spatial organization; In situ; Locus (genetics); Genetics; Genomic organization; Chromosome; Fish <Actinopterygii>; Evolutionary biology; Computational biology; Gene; Enhancer; Gene expression; Fishery","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001389677,0.0001299348,0.0001241641,0.00003168878,0.00008423186,0.00003196801,0.00009328758,0.00009721379,0.00001323763],"category_scores_gemma":[0.00003985279,0.0001345168,0.00001058094,0.0000696326,0.00002059153,0.00000668356,0.00009033794,0.0000436978,0.000009040348],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003376636,"about_ca_system_score_gemma":0.00009076769,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003162377,"about_ca_topic_score_gemma":0.0003018172,"domain_scores_codex":[0.9992059,0.00002946449,0.0002851707,0.0002315851,0.00009652102,0.0001513743],"domain_scores_gemma":[0.9996195,0.000006170432,0.0001084483,0.0001259342,0.00009092152,0.00004896519],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006762767,0.00001568259,0.01571029,0.00002173985,0.00001547704,8.005525e-7,0.0006943287,0.0003322925,0.9655116,0.00002957335,0.00001931225,0.0176421],"study_design_scores_gemma":[0.001364285,0.0000605178,0.5501264,0.00005216445,0.00001799036,0.00002082865,0.0002426804,0.006096088,0.4168681,0.00007446246,0.02445361,0.0006228983],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9574987,0.000459749,0.04158553,0.00004068459,0.00009621045,0.0001621125,0.000007589369,0.000009426757,0.0001399589],"genre_scores_gemma":[0.9899203,0.0002915077,0.008098612,0.0001445373,0.000111946,0.000009682512,0.001382574,0.00001581988,0.00002497674],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5486435,"threshold_uncertainty_score":0.5485437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004844621998336582,"score_gpt":0.1847536003529578,"score_spread":0.1799089783546212,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}