{"id":"W2101757664","doi":"10.1128/jvi.01769-10","title":"Genomic and Proteomic Characterization of the Broad-Host-Range Salmonella Phage PVP-SE1: Creation of a New Phage Genus","year":2011,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":101,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Public Health Agency of Canada","funders":"","keywords":"Lytic cycle; Biology; Myoviridae; Bacteriophage; Genome; ORFS; Podoviridae; Phagemid; Phage display; Phage therapy; Genetics; Phage typing; Escherichia coli; Microbiology; Computational biology; Virus; Open reading frame; Bacteria; Peptide sequence; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001365181,0.0004083768,0.0002606366,0.0004784194,0.0001418282,0.0003442516,0.0001286187,0.0002846943,0.0004402591],"category_scores_gemma":[0.0003775332,0.0001426426,0.0003040234,0.0003567871,0.0002084905,0.0002087188,0.0002499579,0.0003784329,0.0003803482],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000144742,"about_ca_system_score_gemma":0.0001755853,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004626143,"about_ca_topic_score_gemma":0.0004708452,"domain_scores_codex":[0.9999164,0.000009790245,0.00000584109,0.00002750842,0.00002463583,0.00001579141],"domain_scores_gemma":[0.9998006,0.00004992692,0.00004467522,0.00001637136,0.00003205633,0.00005630387],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005615258,0.00001917525,0.00103101,0.00004313715,0.000004670646,0.00006008979,0.00003596079,0.00003891669,0.9976193,0.00002032353,0.00001475856,0.00105655],"study_design_scores_gemma":[0.00003157047,0.0009799175,0.2950339,0.00004424216,0.0001512556,0.003077912,0.0005751706,0.002431288,0.6905525,0.0002014036,0.006880475,0.00004032753],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996884,0.0004205221,0.001312988,0.00004397549,0.000007290044,0.00001400349,0.0009954213,0.00001687739,0.0003048054],"genre_scores_gemma":[0.9839755,0.0006989974,0.004988999,0.00006936163,0.00001820095,0.00003287648,0.008390037,0.00004227717,0.001783808],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004784194,"threshold_uncertainty_score":0.001472831,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01368853767928651,"score_gpt":0.2208242756107454,"score_spread":0.2071357379314589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}