{"id":"W2102048613","doi":"10.1128/mbio.00158-10","title":"Interactions of the Transmembrane Polymeric Rings of the Salmonella enterica Serovar Typhimurium Type III Secretion System","year":2010,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Shandong Academy of Sciences","keywords":"Salmonella enterica; Type three secretion system; Effector; Transmembrane protein; Secretion; Bacterial outer membrane; Inner membrane; Transmembrane domain; Cell biology; Mutant; Translocon; Biology; Chemistry; Biochemistry; Bacteria; Membrane; Salmonella; Membrane protein; Escherichia coli; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001323653,0.0002647561,0.0001018512,0.0001404385,0.0001757702,0.0002148566,0.0001183054,0.0002498183,0.000765137],"category_scores_gemma":[0.0001578609,0.0001306305,0.0002815489,0.00005681194,0.0001409651,0.0001580582,0.0002280079,0.0002147085,0.0003092533],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002765109,"about_ca_system_score_gemma":0.0001165273,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005064855,"about_ca_topic_score_gemma":0.0005685358,"domain_scores_codex":[0.9998726,0.00003111639,0.000006282959,0.00002319935,0.0000316768,0.00003510083],"domain_scores_gemma":[0.999862,0.00001685636,0.00004204069,0.00001129836,0.00002347646,0.00004433484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000541871,0.000008038218,0.0009563484,0.00002336329,0.000009412401,0.00007769254,0.00001447652,0.0001188113,0.9979518,0.0001480318,0.00003927893,0.0005986636],"study_design_scores_gemma":[0.00001920374,0.0004009942,0.03831549,0.00002086443,0.0000499699,0.0008551456,0.0001440977,0.01037925,0.9445671,0.000213241,0.005017457,0.00001710257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974903,0.0003846168,0.00130347,0.00004529674,0.00001085473,0.000005962255,0.00004343,0.00001930053,0.00069681],"genre_scores_gemma":[0.9984099,0.00009958288,0.000887965,0.00001718037,0.000001937085,0.00000227851,0.00009095003,0.00000311938,0.0004871193],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000765137,"threshold_uncertainty_score":0.002559662,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004135899278934343,"score_gpt":0.2006756972589677,"score_spread":0.1965397979800334,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}