{"id":"W2102048613","doi":"10.1128/mbio.00158-10","title":"Interactions of the Transmembrane Polymeric Rings of the Salmonella enterica Serovar Typhimurium Type III Secretion System","year":2010,"lang":"en","type":"article","venue":"mBio","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Shandong Academy of Sciences","keywords":"Salmonella enterica; Type three secretion system; Effector; Transmembrane protein; Secretion; Bacterial outer membrane; Inner membrane; Transmembrane domain; Cell biology; Mutant; Translocon; Biology; Chemistry; Biochemistry; Bacteria; Membrane; Salmonella; Membrane protein; Escherichia coli; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005911399,0.00008617103,0.0001102867,0.00001867947,0.000050555,0.000005139427,0.0003026444,0.0001611319,0.00003683225],"category_scores_gemma":[0.00001757586,0.00005312908,0.0001002935,0.0001466824,0.0001586255,0.00000127358,0.0001106914,0.0001357544,0.000002809561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004431613,"about_ca_system_score_gemma":0.00003498708,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000060447,"about_ca_topic_score_gemma":0.00007296493,"domain_scores_codex":[0.9994655,0.00003272548,0.0001849865,0.0001450778,0.00006546808,0.0001062863],"domain_scores_gemma":[0.9993084,0.000004153053,0.00014028,0.0004420021,0.00008682107,0.00001836294],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000497812,0.000029974,0.0005289114,0.00002759173,0.00002569311,7.372815e-8,0.00002853731,0.000001730176,0.9986398,0.00008792637,0.0001011897,0.0004788066],"study_design_scores_gemma":[0.000182769,0.0001054977,0.005847661,0.00001990671,0.00002524027,0.00001792296,0.00004653992,0.00003503619,0.9785956,0.000006614619,0.01505731,0.000059946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971571,0.00007338354,0.00005398206,0.0003312481,0.001592375,0.0001324616,0.00001928986,0.000007365818,0.0006327799],"genre_scores_gemma":[0.9992707,0.00002819994,0.00007268305,0.00004133593,0.000116258,0.000003497995,0.000009482424,0.00001044851,0.0004474251],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02004423,"threshold_uncertainty_score":0.2166541,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004135899278934343,"score_gpt":0.2006756972589677,"score_spread":0.1965397979800334,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}