{"id":"W2102134701","doi":"10.1093/molbev/msv122","title":"Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic<i>Micromonas</i>Populations","year":2015,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of General Medical Sciences; Gordon and Betty Moore Foundation; U.S. Department of Energy; David and Lucile Packard Foundation; National Institutes of Health; National Science Foundation","keywords":"Biology; Intron; Evolutionary biology; Arctic; Lineage (genetic); Clade; Genome; Phylogenetic tree; Ecology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002044606,0.0001335425,0.0001360204,0.00004448155,0.0001488208,0.00002372483,0.00004407202,0.000147164,0.000001180539],"category_scores_gemma":[0.0001560032,0.0001308594,0.00002818678,0.00005083413,0.0002215201,0.000003287434,0.0001363834,0.00008419914,0.000001889498],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002050827,"about_ca_system_score_gemma":0.00003496801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001460466,"about_ca_topic_score_gemma":0.0001181733,"domain_scores_codex":[0.9991464,0.000103522,0.0001764059,0.0003356854,0.0000488309,0.0001891802],"domain_scores_gemma":[0.9996071,0.00001118529,0.00005673756,0.0001311682,0.00007601899,0.0001177917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006847706,0.00003039539,0.1963373,0.00001149227,0.00005096796,0.000002162431,0.0001123551,0.00001268226,0.7972759,0.004995733,0.0001890736,0.0009134926],"study_design_scores_gemma":[0.001541412,0.0008941459,0.9489821,0.00002215105,0.0001548719,0.0002217585,0.0002620156,0.0002517245,0.01362395,0.03013989,0.003473978,0.0004319709],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9844571,0.007437875,0.007105646,0.0006196221,0.000135791,0.0001513016,0.00001667977,0.000004414946,0.00007152781],"genre_scores_gemma":[0.9969564,0.0003876549,0.002268388,0.0001263426,0.0001239724,0.00001130914,0.00007241623,0.00001004705,0.00004344204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7836519,"threshold_uncertainty_score":0.5336293,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0212690656405266,"score_gpt":0.2649926818681106,"score_spread":0.243723616227584,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}