{"id":"W2102135923","doi":"10.1371/journal.pone.0000227","title":"Conflict between Translation Initiation and Elongation in Vertebrate Mitochondrial Genomes","year":2007,"lang":"en","type":"article","venue":"PLoS ONE","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Ontario Genomics","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Transfer RNA; Genetics; Wobble base pair; Mitochondrial DNA; Genome; Stop codon; Start codon; Gene; Codon usage bias; Translation (biology); RNA; Nucleotide; Messenger RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000758184,0.0002556557,0.0005116925,0.0006637662,0.0006725582,0.001083423,0.0003612861,0.0004943956,0.0005447639],"category_scores_gemma":[0.002694361,0.0003339454,0.0003220408,0.000556708,0.000423076,0.0005527779,0.0006473141,0.000399019,0.0003284508],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007526048,"about_ca_system_score_gemma":0.0003875343,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007477286,"about_ca_topic_score_gemma":0.001035118,"domain_scores_codex":[0.9987929,0.0002639264,0.0001721309,0.0003972074,0.000249565,0.000124213],"domain_scores_gemma":[0.9981083,0.0006434644,0.0006352447,0.0001279018,0.0002810358,0.0002041018],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00153281,0.00004461766,0.08606765,0.0004817439,0.0001215582,0.0006034173,0.0007505419,0.006989439,0.8746695,0.003513398,0.0002789814,0.02494632],"study_design_scores_gemma":[0.0001056733,0.001098154,0.4093301,0.0001862046,0.0002445963,0.003202348,0.00114731,0.08017553,0.4817459,0.01040529,0.01211165,0.0002472748],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994543,0.001038512,0.003061068,0.00005405178,0.000007392354,0.00000551762,0.0001660129,0.00006247589,0.001062072],"genre_scores_gemma":[0.9960005,0.0001929972,0.003086676,0.00002590016,0.000006566891,0.00001185473,0.0004646996,0.00001824048,0.0001926344],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001083423,"threshold_uncertainty_score":0.005460501,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05103143096978267,"score_gpt":0.248532772020644,"score_spread":0.1975013410508613,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}