{"id":"W2102302276","doi":"10.1093/molbev/msp261","title":"Bacterial Genetic Signatures of Human Social Phenomena among M. tuberculosis from an Aboriginal Canadian Population","year":2009,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University; University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Binghamton University; National Institutes of Health","keywords":"Biology; Population; Evolutionary biology; Genetic diversity; Lineage (genetic); Selection (genetic algorithm); Phylogenetic tree; Clade; Genetic drift; Tuberculosis; Genetic structure; Genetics; Genetic variation; Demography; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003409895,0.0003666542,0.0003160787,0.001255118,0.004157975,0.0008653306,0.0008007147,0.0003886224,0.001187147],"category_scores_gemma":[0.001207811,0.0002130738,0.0002649015,0.001873297,0.001068,0.000146257,0.0006999676,0.0004264942,0.0001140836],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01195693,"about_ca_system_score_gemma":0.007622004,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9811828,"about_ca_topic_score_gemma":0.9878948,"domain_scores_codex":[0.9995753,0.00004221712,0.00001345796,0.00008783209,0.0001037072,0.0001774722],"domain_scores_gemma":[0.9995387,0.0000417673,0.00007337705,0.0000266422,0.0001821202,0.000137439],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000180179,0.00007095101,0.9624093,0.00004005037,0.00006421068,0.0006024553,0.01809832,0.0002454026,0.00702521,0.0004213303,0.000542666,0.01029979],"study_design_scores_gemma":[0.000002796717,0.00003524779,0.9933688,0.000009750887,0.00001845133,0.000159877,0.005450312,0.0002939896,0.000107085,0.00005759575,0.0004833053,0.00001274452],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991462,0.0000703097,0.00004383513,0.00008014823,0.000001630133,0.000009355281,0.0001725129,0.000001767641,0.0004741566],"genre_scores_gemma":[0.9991583,0.0001112087,0.0001400004,0.00003474045,0.000002602504,0.000005862971,0.0001474853,0.000001761891,0.0003980926],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01881719,"threshold_uncertainty_score":0.08675402,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008413930729524328,"score_gpt":0.3214227353775932,"score_spread":0.3130088046480689,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}