{"id":"W2102302276","doi":"10.1093/molbev/msp261","title":"Bacterial Genetic Signatures of Human Social Phenomena among M. tuberculosis from an Aboriginal Canadian Population","year":2009,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University; University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Binghamton University; National Institutes of Health","keywords":"Biology; Population; Evolutionary biology; Genetic diversity; Lineage (genetic); Selection (genetic algorithm); Phylogenetic tree; Clade; Genetic drift; Tuberculosis; Genetic structure; Genetics; Genetic variation; Demography; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001484475,0.0001155691,0.0002673387,0.0001736752,0.0001540397,0.000005628828,0.00005490625,0.0003205274,0.00006962495],"category_scores_gemma":[0.00004440594,0.0001062313,0.00005708437,0.00009275828,0.000141762,0.00004697951,0.00000726,0.0001688978,0.000002093406],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001127053,"about_ca_system_score_gemma":0.00006877442,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.1528165,"about_ca_topic_score_gemma":0.02231733,"domain_scores_codex":[0.9989003,0.0002437537,0.00021459,0.0002656361,0.00006695383,0.0003087552],"domain_scores_gemma":[0.9995375,0.00001326269,0.00005694632,0.0001245873,0.00005794905,0.0002098051],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001807491,0.00006477757,0.4615509,0.00001149211,0.00008084141,0.00001326047,0.000101787,0.00001105464,0.5284949,0.005266609,0.0001365245,0.004087083],"study_design_scores_gemma":[0.0005120036,0.0007195393,0.9889322,0.00001199646,0.00006315368,0.00000411288,0.00001291492,0.0002714564,0.0008570273,0.008434007,0.00008568427,0.0000959164],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977002,0.0005150064,0.0002651474,0.001001314,0.00006101025,0.0001619243,0.00004201692,0.00001691982,0.0002364666],"genre_scores_gemma":[0.9980071,0.00002470114,0.000296706,0.0003225463,0.0003004518,0.000005621642,0.001030917,0.000006802503,0.000005159389],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5276378,"threshold_uncertainty_score":0.9955229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008413930729524328,"score_gpt":0.3214227353775932,"score_spread":0.3130088046480689,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}