{"id":"W2102338246","doi":"10.1128/jcm.02589-14","title":"Whole-Genome Phylogenomic Heterogeneity of Neisseria gonorrhoeae Isolates with Decreased Cephalosporin Susceptibility Collected in Canada between 1989 and 2013","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":111,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dr. Georges-L.-Dumont University Hospital Centre; Provincial Laboratory of Public Health; Ste. Anne's Hospital; BC Centre for Disease Control; Public Health Ontario; Public Health Agency of Canada; Toronto Public Health; Alberta Health Services; Saskatchewan Disease Control Laboratory; University of Manitoba","funders":"","keywords":"Biology; Neisseria gonorrhoeae; Genetics; Clade; Whole genome sequencing; Genome; Multilocus sequence typing; Typing; Molecular epidemiology; Cephalosporin; Allele; Phylogenetics; Genotype; Evolutionary biology; Gene; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000204825,0.0003135955,0.000374782,0.001903574,0.0009995293,0.0008196778,0.000366131,0.0002611423,0.000753046],"category_scores_gemma":[0.0006394946,0.000175154,0.0004012511,0.004003028,0.0003745419,0.0001156643,0.0004018712,0.0003174821,0.00009838898],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.008616143,"about_ca_system_score_gemma":0.00996689,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9726774,"about_ca_topic_score_gemma":0.9861102,"domain_scores_codex":[0.9996494,0.00001026338,0.00001113666,0.00008882648,0.0001055651,0.0001348142],"domain_scores_gemma":[0.9995568,0.00002118057,0.0000670335,0.00001514774,0.0002474856,0.000092254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004475896,0.00003367844,0.9480187,0.000165726,0.0002082398,0.000400059,0.00163581,0.0005794198,0.02654035,0.0002125749,0.002207803,0.01954998],"study_design_scores_gemma":[0.000001819433,0.000008638394,0.9980444,0.000008579265,0.00002037644,0.00006528607,0.0004520085,0.0001320054,0.0002581243,0.000005855267,0.000998665,0.000004273555],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9819353,0.0007976931,0.0002462596,0.00009787414,0.000006987318,0.00003599524,0.01554012,0.00002200223,0.001317818],"genre_scores_gemma":[0.9853393,0.0005436382,0.0007159964,0.00008327511,0.000003399463,0.00001422695,0.01232777,0.000008460032,0.0009640498],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02732265,"threshold_uncertainty_score":0.06251484,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02674253466086242,"score_gpt":0.3082429427525707,"score_spread":0.2815004080917083,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}