{"id":"W2102460294","doi":"10.1093/nar/gkl820","title":"Self-splicing of a group IIC intron: 5′ exon recognition and alternative 5′ splicing events implicate the stem–loop motif of a transcriptional terminator","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale","keywords":"Group II intron; Intron; Biology; Exon; RNA splicing; Ribozyme; Terminator (solar); Minigene; Genetics; Group I catalytic intron; Alternative splicing; Exon shuffling; Splice site mutation; Gene; Splicing factor; RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001054994,0.0001237099,0.0001734924,0.00009770403,0.0001344388,0.0000163918,0.0002555196,0.0001259256,0.00002347956],"category_scores_gemma":[0.0000295082,0.00009665667,0.00007569826,0.0001477951,0.0001448731,0.00001087863,0.0001172223,0.000158487,0.000004808086],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002453447,"about_ca_system_score_gemma":0.00003633542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002054808,"about_ca_topic_score_gemma":0.00001787856,"domain_scores_codex":[0.9984242,0.0003006998,0.0002904406,0.0003210628,0.0003839857,0.0002795664],"domain_scores_gemma":[0.9992966,0.00006500136,0.0001123006,0.0002775145,0.0002000476,0.00004851544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001437685,0.00009248572,0.0009027009,0.0001059936,0.00004475653,0.000001145013,0.0001352593,0.00000233612,0.9785317,0.0003829385,0.00002829733,0.0196286],"study_design_scores_gemma":[0.0006094133,0.0005565285,0.004884618,0.000102673,0.00002118766,0.00002005502,0.000272751,0.0002519415,0.9892503,0.003287675,0.0006214409,0.0001214046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971614,0.0003810038,0.001241953,0.0001534462,0.00003168231,0.0005006677,0.00004446515,0.00000701475,0.0004783454],"genre_scores_gemma":[0.9983379,0.0002575123,0.0008690755,0.00001618841,0.0001275666,0.00007789816,0.00002991338,0.00002321841,0.0002607625],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01950719,"threshold_uncertainty_score":0.3941545,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04057600275741934,"score_gpt":0.2955241975824766,"score_spread":0.2549481948250572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}